Homologs in group_2096

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15420 FBDBKF_15420 63.4 Morganella morganii S1 - Chitin-binding protein
EHELCC_15780 EHELCC_15780 63.4 Morganella morganii S2 - Chitin-binding protein
NLDBIP_16590 NLDBIP_16590 63.4 Morganella morganii S4 - Chitin-binding protein
LHKJJB_16215 LHKJJB_16215 63.4 Morganella morganii S3 - Chitin-binding protein
HKOGLL_15985 HKOGLL_15985 63.4 Morganella morganii S5 - Chitin-binding protein
PMI_RS13115 PMI_RS13115 44.7 Proteus mirabilis HI4320 - lytic polysaccharide monooxygenase

Distribution of the homologs in the orthogroup group_2096

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2096

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8EHY2 3.74e-57 189 50 4 182 3 gbpA GlcNAc-binding protein A Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q6LKG5 4.67e-55 184 47 4 198 3 gbpA GlcNAc-binding protein A Photobacterium profundum (strain SS9)
P9WEM3 7.9e-53 170 48 4 173 1 CBP21 AA10 family lytic polysaccharide monooxygenase CBP21 Serratia marcescens
Q8D7V4 1.58e-46 162 40 4 199 3 gbpA GlcNAc-binding protein A Vibrio vulnificus (strain CMCP6)
Q7MEW9 1.06e-45 159 39 4 199 3 gbpA GlcNAc-binding protein A Vibrio vulnificus (strain YJ016)
Q5E183 1.33e-45 159 40 5 198 3 gbpA GlcNAc-binding protein A Aliivibrio fischeri (strain ATCC 700601 / ES114)
B5ESR7 1.43e-45 159 40 5 198 3 gbpA GlcNAc-binding protein A Aliivibrio fischeri (strain MJ11)
Q87FT0 1.73e-45 159 42 4 195 3 gbpA GlcNAc-binding protein A Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A7N3J0 5.95e-45 157 40 4 195 1 gbpA GlcNAc-binding protein A Vibrio campbellii (strain ATCC BAA-1116)
Q8GBD4 5.22e-44 155 40 4 194 3 gbpA GlcNAc-binding protein A Yersinia enterocolitica
A1JQE6 5.22e-44 155 40 4 194 3 gbpA GlcNAc-binding protein A Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q9KLD5 4.98e-42 150 40 4 200 1 gbpA GlcNAc-binding protein A Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F0H4 5.09e-42 150 40 4 200 3 gbpA GlcNAc-binding protein A Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
C3LW75 1.46e-41 149 40 4 200 3 gbpA GlcNAc-binding protein A Vibrio cholerae serotype O1 (strain M66-2)
A0A0D1CHL0 7.61e-40 140 39 4 188 1 UMAG_05439 AA10 family lytic polysaccharide monooxygenase C Ustilago maydis (strain 521 / FGSC 9021)
Q838S1 6.91e-38 132 42 6 173 1 EF_0362 Lytic chitin monooxygenase Enterococcus faecalis (strain ATCC 700802 / V583)
A3KIM2 1.02e-25 100 33 5 186 1 SAM23877_0645 Lytic chitin monooxygenase Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516)
Q02I11 7.18e-18 83 32 6 187 1 cpbD Chitin-binding protein CbpD Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9I589 7.32e-18 83 32 6 187 1 cbpD Chitin-binding protein CbpD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17725
Feature type CDS
Gene -
Product lytic polysaccharide monooxygenase
Location 187142 - 187717 (strand: -1)
Length 576 (nucleotides) / 191 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000007
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2096
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3397 General function prediction only (R) R Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains

Protein Sequence

MQKKHIIIPLITMLFTTSVLAHGYITSPASRSANCKTGSNPAKMCGSAQWEPQSIEALSGFPAGNFPPDGHLASGGISRFLQLDMPGNDWHEVPVQAGKTEFVWHITASHKTRNWRYYITRQDWDSHTPLTRNSFEPEPFCVHDGKESEPPEILSHQCELPARTGYQVIYGVWEIADTANSFYQAIDVRFN

Flanking regions ( +/- flanking 50bp)

AGCACACCTATATCGTTACTATCTCCGGGACACATAACCGGAGATCTATCATGCAAAAAAAACACATAATCATCCCCCTTATCACTATGCTGTTCACCACATCTGTTCTGGCTCACGGGTATATCACCAGCCCGGCCAGCCGTTCTGCAAACTGCAAAACGGGCAGTAACCCTGCAAAAATGTGTGGCTCCGCGCAGTGGGAGCCTCAGAGCATTGAAGCGCTTTCCGGCTTTCCTGCCGGTAATTTTCCGCCGGACGGTCATCTCGCCAGTGGCGGTATTTCCCGCTTCCTGCAACTGGATATGCCGGGTAATGACTGGCATGAGGTTCCGGTTCAGGCCGGAAAAACAGAATTTGTCTGGCACATTACCGCGTCCCACAAAACCCGTAACTGGCGGTATTACATTACCCGTCAGGATTGGGACAGCCACACACCTCTGACCCGTAACTCCTTTGAACCGGAGCCGTTCTGTGTCCATGACGGAAAAGAGAGCGAGCCGCCGGAAATCCTTTCTCATCAGTGTGAATTACCGGCGCGCACCGGCTACCAGGTTATTTACGGGGTGTGGGAGATTGCAGATACCGCCAACAGTTTTTATCAGGCAATTGATGTTCGTTTTAACTGACCACCGCCGCCGGAACTCCCGGCGGTTTTTTTATCATTAATTGCTTCAAA