COG3397


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3397, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains
Function(s) descr. General function prediction only (R)

Occurence in the database

COG3397 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2057 FBDBKF_15420 9401 9976 1 Chitin-binding protein Morganella morganii S1
1 group_2057 EHELCC_15780 8701 9276 1 Chitin-binding protein Morganella morganii S2
2 group_2057 NLDBIP_16590 71387 71962 -1 Chitin-binding protein Morganella morganii S4
3 group_2057 LHKJJB_16215 8701 9276 1 Chitin-binding protein Morganella morganii S3
4 group_2057 HKOGLL_15985 8701 9276 1 Chitin-binding protein Morganella morganii S5
5 group_2057 F4V73_RS17725 187142 187717 -1 lytic polysaccharide monooxygenase Morganella psychrotolerans
6 group_2057 PMI_RS13115 2911710 2912321 -1 lytic polysaccharide monooxygenase Proteus mirabilis HI4320