Homologs in group_71

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08055 FBDBKF_08055 76.5 Morganella morganii S1 fdxH formate dehydrogenase subunit beta
FBDBKF_16125 FBDBKF_16125 95.5 Morganella morganii S1 fdxH formate dehydrogenase subunit beta
EHELCC_13885 EHELCC_13885 76.5 Morganella morganii S2 fdxH formate dehydrogenase subunit beta
EHELCC_16160 EHELCC_16160 95.5 Morganella morganii S2 fdxH formate dehydrogenase subunit beta
NLDBIP_14330 NLDBIP_14330 76.5 Morganella morganii S4 fdxH formate dehydrogenase subunit beta
NLDBIP_17180 NLDBIP_17180 95.5 Morganella morganii S4 fdxH formate dehydrogenase subunit beta
LHKJJB_08520 LHKJJB_08520 76.5 Morganella morganii S3 fdxH formate dehydrogenase subunit beta
LHKJJB_17100 LHKJJB_17100 95.5 Morganella morganii S3 fdxH formate dehydrogenase subunit beta
HKOGLL_08070 HKOGLL_08070 76.5 Morganella morganii S5 fdxH formate dehydrogenase subunit beta
HKOGLL_16740 HKOGLL_16740 95.5 Morganella morganii S5 fdxH formate dehydrogenase subunit beta
F4V73_RS12940 F4V73_RS12940 76.6 Morganella psychrotolerans fdxH formate dehydrogenase subunit beta
PMI_RS15390 PMI_RS15390 85.3 Proteus mirabilis HI4320 fdxH formate dehydrogenase subunit beta

Distribution of the homologs in the orthogroup group_71

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_71

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAJ7 0.0 541 84 1 298 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Shigella flexneri
P0AAJ5 0.0 541 84 1 298 1 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli (strain K12)
P0AAJ6 0.0 541 84 1 298 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAJ4 3.96e-178 496 77 0 291 3 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Shigella flexneri
P0AAJ3 3.96e-178 496 77 0 291 1 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Escherichia coli (strain K12)
P44450 2e-159 450 69 2 305 3 fdxH Formate dehydrogenase iron-sulfur subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8GC87 3.23e-40 142 36 6 211 1 fdhB Formate dehydrogenase subunit beta Megalodesulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)
Q727P4 5.29e-37 134 35 5 206 1 DVU_2811 Formate dehydrogenase 2 subunit beta (cytochrome c-553) Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P33389 5.83e-30 120 30 8 275 4 DVU_0535 Protein DVU_0535 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P0AAK0 8.81e-26 107 32 6 186 3 hybA Hydrogenase-2 operon protein HybA Shigella flexneri
P0AAJ8 8.81e-26 107 32 6 186 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli (strain K12)
P0AAJ9 8.81e-26 107 32 6 186 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli O157:H7
P0A1I1 2.27e-24 100 35 4 162 1 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1I2 2.27e-24 100 35 4 162 3 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhi
Q7CQM9 7.84e-24 100 29 5 201 1 ttrB Tetrathionate reductase subunit B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45003 9.34e-24 99 34 5 170 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P18776 1.69e-23 99 32 5 171 1 dmsB Anaerobic dimethyl sulfoxide reductase chain B Escherichia coli (strain K12)
Q83RZ7 2.28e-23 98 32 5 171 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Shigella flexneri
P0AAJ1 2.35e-22 95 31 5 170 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli (strain K12)
P0AAJ2 2.35e-22 95 31 5 170 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
D3RNN7 1.2e-21 94 30 4 188 1 soeB Sulfite dehydrogenase subunit B Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
P45015 4.48e-21 92 29 2 177 3 nrfC Protein NrfC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAK9 1.05e-19 89 32 4 158 3 nrfC Protein NrfC Shigella flexneri
P0AAK7 1.05e-19 89 32 4 158 3 nrfC Protein NrfC Escherichia coli (strain K12)
P0AAK8 1.05e-19 89 32 4 158 3 nrfC Protein NrfC Escherichia coli O157:H7
P31076 1.2e-19 88 31 3 161 4 psrB Polysulfide reductase chain B Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
Q9HR73 8.52e-18 84 28 6 213 2 dmsB Putative dimethyl sulfoxide reductase iron-sulfur subunit B Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
O30080 6.95e-17 80 33 7 159 3 ttrB Tetrathionate reductase subunit B Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q47CW7 2.8e-16 81 25 4 225 1 pcrB Perchlorate reductase subunit beta Dechloromonas aromatica (strain RCB)
P77375 1.9e-15 77 28 5 181 2 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli (strain K12)
Q8X616 5.44e-15 75 28 6 190 3 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli O157:H7
P27273 1.58e-13 71 26 5 199 1 fdhB1 Formate dehydrogenase iron-sulfur subunit Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
Q9S1G9 5.77e-13 72 24 5 222 1 serB Selenate reductase subunit beta Thauera selenatis
P60069 7.51e-13 71 24 5 223 1 clrB Chlorate reductase subunit beta Ideonella dechloratans
Q57713 9.16e-13 68 32 4 128 3 MJ0265 Uncharacterized ferredoxin MJ0265 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q8GPG3 2.16e-12 70 24 6 224 1 ddhB Dimethylsulfide dehydrogenase subunit beta Rhodovulum sulfidophilum
Q72E85 5.87e-12 68 28 8 207 1 qrcC Menaquinone reductase, iron-sulfur cluster-binding subunit Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q46819 3.1e-11 64 27 7 173 4 ygfS Putative electron transport protein YgfS Escherichia coli (strain K12)
Q7WTT9 6.84e-11 64 26 7 214 1 arrB Arsenate respiratory reductase iron-sulfur subunit ArrB Shewanella sp. (strain ANA-3)
P19318 7.7e-11 66 29 1 112 1 narY Respiratory nitrate reductase 2 beta chain Escherichia coli (strain K12)
P0AAL8 1.12e-10 63 24 2 154 4 ydhY Uncharacterized ferredoxin-like protein YdhY Shigella flexneri
P0AAL6 1.12e-10 63 24 2 154 2 ydhY Uncharacterized ferredoxin-like protein YdhY Escherichia coli (strain K12)
P0AAL7 1.12e-10 63 24 2 154 4 ydhY Uncharacterized ferredoxin-like protein YdhY Escherichia coli O157:H7
P37127 2.68e-10 64 24 5 168 2 aegA Putative oxidoreductase AegA Escherichia coli (strain K12)
P56256 3.1e-10 61 30 9 165 4 ysaA Putative electron transport protein YsaA Escherichia coli (strain K12)
P42176 3.6e-10 64 33 1 87 3 narH Nitrate reductase beta chain Bacillus subtilis (strain 168)
P31894 6.04e-10 61 31 9 177 1 cooF Iron-sulfur protein Rhodospirillum rubrum
P11349 8.42e-10 63 33 1 87 1 narH Respiratory nitrate reductase 1 beta chain Escherichia coli (strain K12)
Q83RN5 8.5e-10 63 33 1 87 3 narH Respiratory nitrate reductase 1 beta chain Shigella flexneri
O29751 5.18e-09 59 27 10 220 1 hmeA Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q8L3A9 6.66e-09 60 26 3 165 1 padI NADH-dependent phenylglyoxylate dehydrogenase subunit beta Aromatoleum evansii
I3R9M8 6.8e-09 59 32 2 101 1 narH Respiratory nitrate reductase subunit beta Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4)
Q46820 1.28e-08 59 28 5 157 2 uacF Putative oxidoreductase UacF Escherichia coli (strain K12)
Q57619 1.09e-07 53 34 5 103 3 MJ0155 Uncharacterized ferredoxin MJ0155 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P85098 1.23e-07 55 23 8 220 1 narH Respiratory nitrate reductase beta chain (Fragments) Bradyrhizobium sp.
P0AAK4 1.31e-07 54 26 5 182 3 hydN Electron transport protein HydN Escherichia coli (strain K12)
P0AAK5 1.31e-07 54 26 5 182 3 hydN Electron transport protein HydN Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAK6 1.31e-07 54 26 5 182 3 hydN Electron transport protein HydN Escherichia coli O157:H7
Q57712 2.52e-07 52 43 5 86 3 MJ0264 Uncharacterized protein MJ0264 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P80564 8.45e-07 53 23 3 163 1 bthL Pyrogallol hydroxytransferase small subunit Pelobacter acidigallici
Q8TPT3 5.18e-05 45 33 1 78 1 MA_1822 L-aspartate semialdehyde sulfurtransferase iron-sulfur subunit Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
P20925 0.00048 43 30 5 115 4 None Frd operon probable iron-sulfur subunit A (Fragment) Proteus vulgaris

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17490
Feature type CDS
Gene fdxH
Product formate dehydrogenase subunit beta
Location 129541 - 130482 (strand: -1)
Length 942 (nucleotides) / 313 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_71
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF09163 Formate dehydrogenase N, transmembrane
PF13247 4Fe-4S dicluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0437 Energy production and conversion (C) C Fe-S-cluster-containing dehydrogenase component (DMSO reductase)

Kegg Ortholog Annotation(s)

Protein Sequence

MSMQSQDIIRRSATNSLTPAPQVRDFKEEVAKLIDVTTCIGCKACQVACSEWNDIRDTIGTNVGVYDNPQDLTAKSWTVMRFSEVEENGKFEWLIRKDGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDNRVYKCTLCVDRVDVGQEPACVKTCPTGAIHFGSKEDMQALAGDRVIDLKSRGYENAGLYDPQGVGGTHVMYVLHHANKPQLYHGLPENPEISATVKFWKGAWKPLAAVGFAATFAAAIFHYVGIGPNRVSKREEEEALKDIQDVPAKTEQSAGQEEQK

Flanking regions ( +/- flanking 50bp)

GAATTTAAAGCCTTCCTGGTTAATGTGGAAAAGGTGTAAGGAGATAAATTATGTCAATGCAATCACAGGACATTATTCGTCGCTCGGCCACCAATTCCCTGACCCCCGCGCCTCAGGTGCGGGATTTTAAGGAAGAGGTTGCGAAGCTTATCGATGTCACCACCTGTATCGGCTGTAAAGCCTGTCAGGTGGCGTGTTCGGAGTGGAATGATATCCGGGATACCATCGGGACGAATGTGGGTGTGTATGATAACCCGCAGGATCTGACCGCCAAATCCTGGACCGTCATGCGTTTCTCCGAAGTGGAAGAGAACGGTAAATTTGAATGGCTTATCCGCAAAGATGGCTGCATGCACTGCGCAGATCCGGGCTGTCTGAAAGCCTGTCCGGCGGAAGGCGCAATCATTCAGTATGCGAATGGTATTGTCGATTTTCAGTCTGAGCACTGTATCGGCTGTGGTTACTGCATCGCCGGGTGTCCGTTTGATGTGCCGCGCATGAATAAAGACGACAACCGCGTGTACAAATGTACGCTGTGTGTCGACCGCGTTGATGTGGGTCAGGAGCCTGCCTGTGTGAAAACCTGTCCGACCGGGGCGATTCATTTTGGCTCGAAAGAGGATATGCAGGCGCTGGCGGGTGATCGCGTTATCGATCTGAAAAGCCGTGGTTATGAGAACGCCGGTTTGTATGATCCGCAGGGTGTCGGCGGTACGCACGTTATGTATGTGCTGCATCATGCCAACAAACCGCAGCTGTATCATGGTCTGCCGGAGAATCCGGAGATCAGTGCGACAGTGAAATTCTGGAAAGGCGCGTGGAAACCACTGGCAGCAGTTGGTTTTGCGGCAACCTTTGCGGCGGCAATCTTCCACTATGTTGGTATCGGGCCTAACCGGGTATCAAAACGTGAGGAAGAAGAGGCTCTGAAGGATATTCAGGATGTTCCGGCAAAGACTGAGCAATCAGCAGGTCAGGAGGAGCAGAAATAATGCAACAGGATGATAAAGAAAAAATTATCCGCCACAAACCCATTGCGCGC