Homologs in group_2330

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18235 FBDBKF_18235 31.7 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_18270 EHELCC_18270 31.7 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_18195 NLDBIP_18195 31.7 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_18390 LHKJJB_18390 31.7 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_18125 HKOGLL_18125 31.7 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS01765 F4V73_RS01765 31.3 Morganella psychrotolerans - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_2330

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2330

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P10183 1.8e-18 87 24 5 296 3 nahR HTH-type transcriptional activator NahR Pseudomonas putida
Q02876 5.6e-17 82 27 8 301 3 nodD1 Nodulation protein D 1 Rhizobium tropici
Q9EXL7 9.31e-17 82 24 6 298 3 nagR HTH-type transcriptional activator NagR Ralstonia sp.
P10151 6.54e-16 80 23 8 305 1 leuO HTH-type transcriptional regulator LeuO Escherichia coli (strain K12)
P18561 2.57e-15 78 25 5 293 3 syrM HTH-type transcriptional regulator SyrM Rhizobium meliloti (strain 1021)
Q9ZN79 3.9e-15 77 23 4 296 3 linR HTH-type transcriptional regulator LinR Sphingobium indicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S)
P52698 5.6e-15 77 26 10 310 3 phcA HTH-type transcriptional regulator PhcA Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
P23719 6.11e-15 77 27 7 297 3 nodD2 Nodulation protein D 2 Rhizobium leguminosarum bv. phaseoli
P23718 7.07e-15 77 26 8 299 3 nodD1 Nodulation protein D 1 Rhizobium leguminosarum bv. phaseoli
Q08812 1.83e-14 76 23 7 280 3 syrM HTH-type transcriptional regulator SyrM Rhizobium etli
P46924 1.02e-13 73 24 9 305 3 leuO Probable HTH-type transcriptional regulator LeuO Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q45263 2e-13 73 24 5 298 3 nodD2 Nodulation protein D 2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P04681 2.7e-13 72 24 6 309 3 nodD Nodulation protein D Rhizobium leguminosarum bv. viciae
P55733 7.89e-13 71 25 4 297 3 syrM2 HTH-type transcriptional regulator SyrM 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P04682 1.12e-12 70 25 5 296 3 nodD Nodulation protein D Bradyrhizobium sp. (strain ANU 289)
P50323 1.25e-12 70 25 6 298 3 nodD1 Nodulation protein D 1 Bradyrhizobium elkanii
P23720 2.2e-12 69 25 6 297 3 nodD3 Nodulation protein D 3 Rhizobium leguminosarum bv. phaseoli
P50331 3.88e-12 68 24 7 309 3 nodD1 Nodulation protein D 1 Neorhizobium galegae
P50327 3.88e-12 68 23 6 301 3 nodD1 Nodulation protein D 1 Bradyrhizobium sp. (strain NC92)
P12232 8.21e-12 68 27 10 303 3 nodD1 Nodulation protein D 1 Bradyrhizobium japonicum
P55359 8.42e-12 68 26 8 301 3 nodD1 Nodulation protein D 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P16556 1.19e-11 67 24 6 308 3 nodD Nodulation protein D Rhizobium leguminosarum
P08719 1.24e-11 67 23 6 297 3 nodD2 Nodulation protein D 2 Rhizobium meliloti (strain 1021)
P30979 1.55e-11 67 23 10 300 3 ybeF Uncharacterized HTH-type transcriptional regulator YbeF Escherichia coli (strain K12)
P55619 2.2e-11 67 26 10 302 1 syrM1 HTH-type transcriptional regulator SyrM 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P03031 3.99e-11 66 24 7 302 3 nodD1 Nodulation protein D 1 Rhizobium meliloti (strain 1021)
P55700 1.23e-10 64 22 4 309 1 nodD2 Nodulation protein D 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q52838 1.49e-10 64 25 10 312 3 nodD1 Nodulation protein D 1 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
P12233 2.29e-10 63 22 4 309 3 nodD2 Nodulation protein D 2 Bradyrhizobium japonicum
P04680 2.33e-10 63 24 7 310 3 nodD Nodulation protein D Rhizobium leguminosarum bv. trifolii
P50324 2.59e-10 63 23 6 312 3 nodD2 Nodulation protein D 2 Bradyrhizobium elkanii
Q45264 2.98e-10 63 24 6 298 3 nodD1 Nodulation protein D 1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P52679 3.78e-10 63 21 5 299 1 pcpR PCP degradation transcriptional activation protein Sphingobium chlorophenolicum
P23190 5.7e-10 62 23 7 301 3 nodD3 Nodulation protein D 3 Rhizobium meliloti (strain 1021)
P32008 5.39e-09 59 23 3 286 3 nodD2 Nodulation protein D 2 Rhizobium tropici
Q8Z2P0 2.78e-08 57 24 9 311 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhi
Q5PKV5 3.77e-08 57 24 9 311 3 yidZ HTH-type transcriptional regulator YidZ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q328Z9 9.19e-08 56 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Shigella dysenteriae serotype 1 (strain Sd197)
B4TAV5 1.29e-07 55 23 9 311 3 yidZ HTH-type transcriptional regulator YidZ Salmonella heidelberg (strain SL476)
B4TN13 1.34e-07 55 23 9 313 3 yidZ HTH-type transcriptional regulator YidZ Salmonella schwarzengrund (strain CVM19633)
B4SYB4 1.34e-07 55 23 9 313 3 yidZ HTH-type transcriptional regulator YidZ Salmonella newport (strain SL254)
B5QUQ7 1.34e-07 55 23 9 313 3 yidZ HTH-type transcriptional regulator YidZ Salmonella enteritidis PT4 (strain P125109)
B5FN16 1.34e-07 55 23 9 313 3 yidZ HTH-type transcriptional regulator YidZ Salmonella dublin (strain CT_02021853)
B5EYX8 1.34e-07 55 23 9 313 3 yidZ HTH-type transcriptional regulator YidZ Salmonella agona (strain SL483)
B7NF28 2.22e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q8ZKY0 2.24e-07 55 23 9 313 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q3YWK2 2.3e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Shigella sonnei (strain Ss046)
Q31UW5 2.3e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 4 (strain Sb227)
B2TUR4 2.3e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I3U4 2.3e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain SE11)
B1IX27 2.3e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A6H3 2.3e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O9:H4 (strain HS)
B7L852 2.3e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain 55989 / EAEC)
A7ZTR6 2.3e-07 55 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O139:H28 (strain E24377A / ETEC)
Q8FBU9 4.28e-07 54 25 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q52779 7.63e-07 53 25 8 293 3 nodD3 Nodulation protein D 3 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
P50328 1.35e-06 52 23 6 299 3 nodD2 Nodulation protein D 2 Bradyrhizobium sp. (strain NC92)
P31463 1.51e-06 52 24 10 306 1 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12)
B1X9U0 1.51e-06 52 24 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / DH10B)
C4ZYY9 1.51e-06 52 24 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / MC4100 / BW2952)
B5YXB5 2.63e-06 51 24 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XB23 2.63e-06 51 24 10 306 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7
P77746 4.56e-06 50 25 1 117 2 ybdO Uncharacterized HTH-type transcriptional regulator YbdO Escherichia coli (strain K12)
A8ACM1 6.66e-06 50 22 8 306 3 yidZ HTH-type transcriptional regulator YidZ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17425
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 115517 - 116419 (strand: -1)
Length 903 (nucleotides) / 300 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2330
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MLNMDLNLLVTLNVLLTEANITRAAQIQGMSVSAMSRALTRLRMALNDPLLVKSGRFMVLTPYAASVRTRVTQLIEQIEQVFKTPDTTDFIKLDQQFTLRASAGFAENSGALLLARMRLDAPAVTLRIISKEEKYGRGLKEGKLDAEISVVSNNTEQEMKSRLLFSDNMIGVVSKTHPLTQLPVTADNLQQYEFIGIDRRAPGERTQPVCCMSGSGITIKPAVMLVSGFSAAIAIAAMSNLIAVVPEQFTGNLRKNLFSFRLPFPAEGLNFSLLWHPRTDNDPVQKWFRECILQVCRGDK

Flanking regions ( +/- flanking 50bp)

GGGTATTGCGCTGCGGTATTTGCGTCGGCGCTGAATACGGAGCAGCTGATATGCTGAATATGGATCTTAATCTGCTGGTTACATTGAATGTGTTGCTGACGGAAGCCAATATTACCCGTGCCGCACAGATTCAGGGCATGAGTGTTTCTGCAATGAGCCGGGCACTGACCCGTCTGCGCATGGCTCTTAATGACCCGCTGCTGGTAAAATCCGGGCGCTTCATGGTGCTGACACCTTATGCCGCGTCTGTCCGGACCCGGGTAACACAGCTGATTGAGCAGATTGAGCAGGTATTCAAAACGCCGGATACAACCGATTTTATAAAGCTGGATCAGCAATTTACTTTACGGGCATCTGCCGGTTTTGCTGAAAACTCAGGTGCATTACTGTTGGCGAGGATGAGGCTGGATGCCCCCGCCGTTACATTGCGTATTATCAGCAAAGAAGAAAAATATGGCAGAGGATTAAAAGAGGGAAAGCTGGATGCTGAAATTTCAGTCGTCAGCAATAATACTGAGCAGGAAATGAAAAGCCGTCTGCTGTTTTCAGACAATATGATCGGAGTGGTGAGTAAGACGCACCCGCTGACGCAGTTACCTGTGACGGCTGATAACCTGCAACAATATGAATTTATTGGCATTGATCGCCGGGCGCCGGGTGAAAGAACACAACCGGTATGCTGCATGAGTGGATCCGGTATCACTATCAAGCCTGCCGTAATGCTTGTTTCCGGTTTTTCTGCGGCAATTGCGATAGCGGCAATGAGCAATCTGATTGCAGTTGTACCAGAGCAGTTTACCGGCAATTTACGCAAAAATCTGTTTAGTTTCCGGTTGCCATTTCCGGCGGAGGGGCTTAATTTTTCACTATTATGGCATCCGCGTACTGATAATGATCCGGTACAAAAATGGTTCCGTGAATGTATTTTGCAGGTTTGTCGCGGGGATAAATAACACGGTTTTTTCTGATGAGGTGGCAACGAATATAATGACAACACATCTGA