Homologs in group_2330

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18235 FBDBKF_18235 86.9 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_18270 EHELCC_18270 86.9 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_18195 NLDBIP_18195 86.9 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_18390 LHKJJB_18390 86.9 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_18125 HKOGLL_18125 86.9 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS17425 F4V73_RS17425 31.3 Morganella psychrotolerans - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_2330

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2330

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P10183 6.62e-30 117 28 4 291 3 nahR HTH-type transcriptional activator NahR Pseudomonas putida
Q9EXL7 2.18e-27 111 26 3 296 3 nagR HTH-type transcriptional activator NagR Ralstonia sp.
Q9ZN79 4.72e-27 110 28 4 300 3 linR HTH-type transcriptional regulator LinR Sphingobium indicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S)
P04680 8.65e-25 104 29 10 303 3 nodD Nodulation protein D Rhizobium leguminosarum bv. trifolii
P52679 7.17e-24 101 27 8 304 1 pcpR PCP degradation transcriptional activation protein Sphingobium chlorophenolicum
P50331 7.35e-23 99 28 10 295 3 nodD1 Nodulation protein D 1 Neorhizobium galegae
P23190 4.31e-22 97 29 13 306 3 nodD3 Nodulation protein D 3 Rhizobium meliloti (strain 1021)
P04681 5.49e-22 96 26 7 299 3 nodD Nodulation protein D Rhizobium leguminosarum bv. viciae
P10151 6.36e-22 96 25 9 304 1 leuO HTH-type transcriptional regulator LeuO Escherichia coli (strain K12)
P46924 1.38e-21 95 25 10 305 3 leuO Probable HTH-type transcriptional regulator LeuO Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P50327 2.27e-21 95 26 10 309 3 nodD1 Nodulation protein D 1 Bradyrhizobium sp. (strain NC92)
Q45263 5.65e-21 94 26 10 308 3 nodD2 Nodulation protein D 2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P55700 8.48e-21 93 28 9 302 1 nodD2 Nodulation protein D 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P12233 1.24e-20 93 28 9 302 3 nodD2 Nodulation protein D 2 Bradyrhizobium japonicum
P23719 1.75e-20 92 26 7 299 3 nodD2 Nodulation protein D 2 Rhizobium leguminosarum bv. phaseoli
P55359 4.92e-20 91 27 5 300 3 nodD1 Nodulation protein D 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P12232 6.56e-20 91 27 5 300 3 nodD1 Nodulation protein D 1 Bradyrhizobium japonicum
P23720 1.42e-19 90 27 9 303 3 nodD3 Nodulation protein D 3 Rhizobium leguminosarum bv. phaseoli
P16556 2.35e-19 89 25 8 303 3 nodD Nodulation protein D Rhizobium leguminosarum
P04682 2.36e-19 90 26 9 305 3 nodD Nodulation protein D Bradyrhizobium sp. (strain ANU 289)
P03031 4.43e-18 85 26 11 303 3 nodD1 Nodulation protein D 1 Rhizobium meliloti (strain 1021)
P18561 6.1e-18 85 28 8 299 3 syrM HTH-type transcriptional regulator SyrM Rhizobium meliloti (strain 1021)
Q02876 1.01e-17 85 26 9 298 3 nodD1 Nodulation protein D 1 Rhizobium tropici
P50323 2.12e-17 84 26 9 305 3 nodD1 Nodulation protein D 1 Bradyrhizobium elkanii
P52698 2.94e-17 84 26 8 303 3 phcA HTH-type transcriptional regulator PhcA Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q45264 6.83e-17 82 25 9 305 3 nodD1 Nodulation protein D 1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P55733 4.01e-16 80 26 10 299 3 syrM2 HTH-type transcriptional regulator SyrM 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P50324 6.44e-16 80 26 11 306 3 nodD2 Nodulation protein D 2 Bradyrhizobium elkanii
Q52838 3.09e-15 78 27 10 304 3 nodD1 Nodulation protein D 1 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
Q08812 1.52e-14 76 29 10 303 3 syrM HTH-type transcriptional regulator SyrM Rhizobium etli
P23718 2.65e-14 75 25 12 301 3 nodD1 Nodulation protein D 1 Rhizobium leguminosarum bv. phaseoli
P08719 6.1e-14 74 25 10 305 3 nodD2 Nodulation protein D 2 Rhizobium meliloti (strain 1021)
P55619 3.53e-13 72 29 10 299 1 syrM1 HTH-type transcriptional regulator SyrM 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P32008 1.89e-12 70 26 10 306 3 nodD2 Nodulation protein D 2 Rhizobium tropici
Q52779 2.96e-12 69 25 10 306 3 nodD3 Nodulation protein D 3 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
P50328 5.34e-11 65 25 8 302 3 nodD2 Nodulation protein D 2 Bradyrhizobium sp. (strain NC92)
P20669 3.83e-10 63 26 8 293 3 nodD Nodulation protein D Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
Q328Z9 9.98e-09 58 21 8 305 3 yidZ HTH-type transcriptional regulator YidZ Shigella dysenteriae serotype 1 (strain Sd197)
P39592 2.1e-08 57 19 4 278 3 ywbI Uncharacterized HTH-type transcriptional regulator YwbI Bacillus subtilis (strain 168)
Q8Z2P0 2.27e-08 57 22 10 305 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhi
Q8ZKY0 2.63e-08 57 22 10 305 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B4TAV5 2.63e-08 57 22 10 305 3 yidZ HTH-type transcriptional regulator YidZ Salmonella heidelberg (strain SL476)
Q5PKV5 3.88e-08 57 22 10 305 3 yidZ HTH-type transcriptional regulator YidZ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P42722 5.35e-08 56 29 2 149 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
O33945 5.5e-08 56 27 2 148 3 None Probable cat1 operon transcriptional activator Acinetobacter lwoffii
B5YXB5 7.45e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XB23 7.45e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7
B7NF28 9.03e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q3YWK2 9.12e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Shigella sonnei (strain Ss046)
Q31UW5 9.12e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 4 (strain Sb227)
B2TUR4 9.12e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I3U4 9.12e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain SE11)
B1IX27 9.12e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A6H3 9.12e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O9:H4 (strain HS)
B7L852 9.12e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain 55989 / EAEC)
A7ZTR6 9.12e-08 56 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O139:H28 (strain E24377A / ETEC)
B4TN13 9.46e-08 56 21 8 304 3 yidZ HTH-type transcriptional regulator YidZ Salmonella schwarzengrund (strain CVM19633)
B4SYB4 9.46e-08 56 21 8 304 3 yidZ HTH-type transcriptional regulator YidZ Salmonella newport (strain SL254)
B5QUQ7 9.46e-08 56 21 8 304 3 yidZ HTH-type transcriptional regulator YidZ Salmonella enteritidis PT4 (strain P125109)
B5FN16 9.46e-08 56 21 8 304 3 yidZ HTH-type transcriptional regulator YidZ Salmonella dublin (strain CT_02021853)
B5EYX8 9.46e-08 56 21 8 304 3 yidZ HTH-type transcriptional regulator YidZ Salmonella agona (strain SL483)
P31463 1.05e-07 55 21 8 301 1 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12)
B1X9U0 1.05e-07 55 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / DH10B)
C4ZYY9 1.05e-07 55 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / MC4100 / BW2952)
Q8FBU9 1.3e-07 55 21 8 301 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A8ACM1 2.62e-07 54 20 9 310 3 yidZ HTH-type transcriptional regulator YidZ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
P30979 3.82e-06 51 23 5 189 3 ybeF Uncharacterized HTH-type transcriptional regulator YbeF Escherichia coli (strain K12)
Q8KA72 4.11e-06 51 25 3 168 3 metR HTH-type transcriptional regulator MetR Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P0ACQ9 1.81e-05 49 20 2 174 3 tdcA HTH-type transcriptional regulator TdcA Shigella flexneri
P0ACQ7 1.81e-05 49 20 2 174 3 tdcA HTH-type transcriptional regulator TdcA Escherichia coli (strain K12)
P0ACQ8 1.81e-05 49 20 2 174 3 tdcA HTH-type transcriptional regulator TdcA Escherichia coli O157:H7
P52665 3.35e-05 46 30 2 144 3 budR HTH-type transcriptional regulator BudR (Fragment) Klebsiella aerogenes
P56885 4.46e-05 47 23 2 188 3 cbbR HTH-type transcriptional regulator CbbR Sinorhizobium medicae (strain WSM419)
P05827 5.66e-05 47 22 4 257 3 ilvY HTH-type transcriptional regulator IlvY Escherichia coli (strain K12)
Q9HWH8 6.7e-05 47 24 3 175 3 nmoR HTH-type transcriptional regulator NmoR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0A2Q4 7.57e-05 47 26 2 161 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 7.57e-05 47 26 2 161 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
P77746 0.000103 46 34 0 83 2 ybdO Uncharacterized HTH-type transcriptional regulator YbdO Escherichia coli (strain K12)
P94403 0.00015 46 21 5 223 3 bsdA HTH-type transcriptional regulator BsdA Bacillus subtilis (strain 168)
P70773 0.000157 46 43 0 55 3 argP HTH-type transcriptional regulator ArgP Aeromonas salmonicida
P58332 0.00016 46 24 4 190 3 cbbR HTH-type transcriptional regulator CbbR Rhizobium meliloti (strain 1021)
P0A4T7 0.000182 46 28 4 156 3 pcaQ HTH-type transcriptional regulator PcaQ Rhizobium radiobacter
P0A4T6 0.000182 46 28 4 156 3 pcaQ HTH-type transcriptional regulator PcaQ Agrobacterium fabrum (strain C58 / ATCC 33970)
P77559 0.000189 45 26 1 147 3 ynfL Uncharacterized HTH-type transcriptional regulator YnfL Escherichia coli (strain K12)
P0A2Q2 0.000249 45 22 4 257 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q3 0.000249 45 22 4 257 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhi
O35038 0.000302 45 25 5 183 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
P52670 0.000575 44 20 5 206 3 ilvR HTH-type transcriptional regulator IlvR Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P39647 0.000871 43 23 1 180 1 cysL HTH-type transcriptional regulator CysL Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01765
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 390896 - 391789 (strand: 1)
Length 894 (nucleotides) / 297 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2330
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MNNIKKLDLNQLVTLHALLRERHVSRAAVSLHRSQPAVSHTLNQLRELFQDPLLIRKQGQYQLSSKAEALYAPLTQALGQLDDLIAQQDFRPENCARRFNIAMSDYGAAILCAKLIRYLRDSAPAVNLQIWQGNREEMQSKLQEGSLDLAFGVFAAPDYTLRAQTVFTDTMVSVADKRYCTEGKMSMADWLSHPHILASMKPYEANEIDRQLQLLNYRRRVAVSIPYWQIASQLPQGTDLILTVAQRALPDNISESLQVFAPPLVIAPLNFQMLWHQRSDGDEALSWLREAVMKVCN

Flanking regions ( +/- flanking 50bp)

GTTTCTGTCGGGGCGGGAAATGATCAATTTTATAGAGTACTATTCGCCATATGAATAATATAAAGAAATTGGATTTAAATCAGCTTGTTACGCTTCATGCATTACTGAGAGAGCGCCATGTCAGCCGTGCTGCGGTATCATTGCACCGCAGCCAGCCGGCGGTCAGCCACACACTGAATCAGTTGCGTGAGTTATTTCAGGATCCGCTGCTTATCCGCAAGCAGGGGCAATACCAGTTATCCAGCAAGGCGGAAGCGCTTTATGCACCGCTGACACAGGCGCTCGGGCAGCTTGATGATTTGATAGCGCAGCAGGATTTCCGTCCGGAAAATTGCGCCCGGCGCTTTAATATTGCTATGTCTGATTATGGCGCGGCTATTTTGTGTGCGAAGCTTATCCGCTATCTGCGTGACAGCGCGCCTGCGGTGAATCTGCAAATCTGGCAGGGCAACCGGGAGGAGATGCAGAGTAAATTACAGGAAGGCAGCCTCGATCTCGCGTTTGGTGTTTTTGCCGCGCCGGATTACACACTGCGCGCACAAACTGTTTTTACGGACACCATGGTTAGTGTGGCAGATAAACGGTATTGCACAGAGGGGAAAATGTCGATGGCAGACTGGCTTTCCCATCCTCATATTCTGGCGAGTATGAAACCTTATGAAGCCAATGAGATAGACCGGCAGTTACAACTGCTTAATTACCGGCGGCGTGTTGCGGTTTCAATACCTTACTGGCAGATTGCATCACAGTTACCACAGGGAACGGATTTAATTCTGACGGTCGCACAGCGCGCGTTACCGGACAATATTAGTGAGTCATTGCAGGTATTTGCACCGCCACTGGTGATTGCACCACTGAATTTTCAGATGTTATGGCATCAGCGAAGTGACGGGGACGAGGCATTGAGCTGGTTGAGAGAAGCGGTTATGAAAGTATGTAACTGATAAGCAAGCTATTGATTAATGCTGTGACAGTTTATCAGTTCCAGCAGGTA