Homologs in group_1756

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12230 FBDBKF_12230 94.0 Morganella morganii S1 priA primosomal protein N'
EHELCC_14075 EHELCC_14075 94.0 Morganella morganii S2 priA primosomal protein N'
NLDBIP_15170 NLDBIP_15170 94.0 Morganella morganii S4 priA primosomal protein N'
LHKJJB_15440 LHKJJB_15440 94.0 Morganella morganii S3 priA primosomal protein N'
HKOGLL_14560 HKOGLL_14560 94.0 Morganella morganii S5 priA primosomal protein N'
PMI_RS15920 PMI_RS15920 71.6 Proteus mirabilis HI4320 priA primosomal protein N'

Distribution of the homologs in the orthogroup group_1756

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1756

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P17888 0.0 1036 67 1 733 1 priA Primosomal protein N' Escherichia coli (strain K12)
P44647 0.0 733 51 10 740 3 priA Primosomal protein N' Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P94461 9.61e-132 412 36 5 577 3 priA Primosomal protein N' Bacillus subtilis (strain 168)
P57220 7.61e-125 392 29 11 738 3 priA Primosomal protein N' Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9Z6Y2 6.05e-124 390 34 17 759 3 priA Primosomal protein N' Chlamydia pneumoniae
O84783 3.43e-121 383 35 17 757 3 priA Primosomal protein N' Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9PLE5 4.01e-119 378 34 17 750 3 priA Primosomal protein N' Chlamydia muridarum (strain MoPn / Nigg)
P05445 1.64e-118 378 34 15 809 3 priA Primosomal protein N' Rhodospirillum rubrum
Q8KA15 4.67e-117 371 27 10 745 3 priA Primosomal protein N' Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P74397 2.01e-112 362 37 13 606 3 priA Primosomal protein N' Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q1RI08 2.92e-110 351 35 7 534 3 priA Primosomal protein N' Rickettsia bellii (strain RML369-C)
Q1RI08 0.000381 47 29 3 103 3 priA Primosomal protein N' Rickettsia bellii (strain RML369-C)
Q92HH1 8.25e-106 340 34 8 536 3 priA Primosomal protein N' Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q92HH1 3.36e-05 51 30 3 103 3 priA Primosomal protein N' Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4UL64 1.26e-105 339 34 7 534 3 priA Primosomal protein N' Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q4UL64 8.37e-06 53 34 3 103 3 priA Primosomal protein N' Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9ZD10 1e-103 334 34 7 535 3 priA Primosomal protein N' Rickettsia prowazekii (strain Madrid E)
O83258 2.03e-103 333 36 6 534 3 priA Primosomal protein N' Treponema pallidum (strain Nichols)
Q68WJ4 1.96e-102 331 34 8 535 3 priA Primosomal protein N' Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q45032 1.46e-83 281 30 6 515 3 priA Primosomal protein N' Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q9WY22 3.7e-71 249 27 10 539 3 priA Primosomal protein N' Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
O25149 5.91e-70 243 31 9 533 3 priA Primosomal protein N' Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKE4 2.74e-68 239 30 9 533 3 priA Primosomal protein N' Helicobacter pylori (strain J99 / ATCC 700824)
P9WMQ9 2.88e-13 77 27 3 214 1 priA Probable primosomal protein N' Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P0A5A6 2.88e-13 77 27 3 214 3 priA Probable primosomal protein N' Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9CCQ3 6.41e-13 75 25 9 395 3 priA Probable primosomal protein N' Mycobacterium leprae (strain TN)
P9WMQ8 3.85e-12 73 27 4 216 3 priA Probable primosomal protein N' Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9ZJ57 2.01e-09 65 25 2 173 3 mfd Transcription-repair-coupling factor Helicobacter pylori (strain J99 / ATCC 700824)
O26066 7.74e-09 63 25 2 171 3 mfd Transcription-repair-coupling factor Helicobacter pylori (strain ATCC 700392 / 26695)
P57381 1.31e-07 58 30 3 149 3 mfd Transcription-repair-coupling factor Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
F4JFJ3 1.78e-07 58 31 4 150 2 At3g02060 ATP-dependent DNA helicase At3g02060, chloroplastic Arabidopsis thaliana
P30958 3e-07 57 29 5 172 1 mfd Transcription-repair-coupling factor Escherichia coli (strain K12)
Q54900 5.32e-07 57 29 3 148 3 recG ATP-dependent DNA helicase RecG Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
O52236 9.26e-07 56 31 7 173 3 mfd Transcription-repair-coupling factor Myxococcus xanthus
Q89AK2 2.56e-06 54 25 4 170 3 mfd Transcription-repair-coupling factor Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O51568 2.74e-06 54 28 3 140 3 mfd Transcription-repair-coupling factor Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O67837 6.84e-06 53 29 3 134 3 recG ATP-dependent DNA helicase RecG Aquifex aeolicus (strain VF5)
Q55681 1.21e-05 52 26 4 176 3 recG ATP-dependent DNA helicase RecG Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q55750 1.33e-05 52 29 5 151 3 mfd Transcription-repair-coupling factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P45128 4.06e-05 50 30 6 172 3 mfd Transcription-repair-coupling factor Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4L3G0 5.97e-05 50 28 5 174 3 mfd Transcription-repair-coupling factor Staphylococcus haemolyticus (strain JCSC1435)
Q49V12 6.62e-05 50 28 6 190 3 mfd Transcription-repair-coupling factor Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
O69460 7.09e-05 50 29 2 134 3 recG ATP-dependent DNA helicase RecG Mycobacterium leprae (strain TN)
P9WMQ5 7.99e-05 50 27 8 192 1 mfd Transcription-repair-coupling factor Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMQ4 7.99e-05 50 27 8 192 3 mfd Transcription-repair-coupling factor Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64327 7.99e-05 50 27 8 192 3 mfd Transcription-repair-coupling factor Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P39145 0.000128 48 25 3 166 2 comFA ComF operon protein 1 Bacillus subtilis (strain 168)
Q8NXZ6 0.000216 48 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain MW2)
Q6GBY5 0.000216 48 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain MSSA476)
Q7A7B2 0.000216 48 30 7 174 1 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain N315)
Q99WA0 0.000216 48 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2G0R8 0.000221 48 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FJD8 0.000221 48 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain USA300)
Q2YVY2 0.000229 48 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q5HIH2 0.000231 48 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain COL)
Q6GJG8 0.000239 48 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain MRSA252)
O05955 0.000366 47 30 4 144 3 mfd Transcription-repair-coupling factor Rickettsia prowazekii (strain Madrid E)
Q5HRQ2 0.000441 47 29 7 177 3 mfd Transcription-repair-coupling factor Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CMT1 0.000445 47 29 7 177 3 mfd Transcription-repair-coupling factor Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
P37474 0.000453 47 28 6 170 3 mfd Transcription-repair-coupling factor Bacillus subtilis (strain 168)
P9WMQ7 0.000782 46 28 2 133 3 recG ATP-dependent DNA helicase RecG Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMQ6 0.000782 46 28 2 133 3 recG ATP-dependent DNA helicase RecG Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64323 0.000782 46 28 2 133 3 recG ATP-dependent DNA helicase RecG Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17060
Feature type CDS
Gene priA
Product primosomal protein N'
Location 38792 - 40993 (strand: 1)
Length 2202 (nucleotides) / 733 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1756
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00270 DEAD/DEAH box helicase
PF00271 Helicase conserved C-terminal domain
PF17764 3'DNA-binding domain (3'BD)
PF18074 Primosomal protein N C-terminal domain
PF18319 PriA DNA helicase Cys-rich region (CRR) domain
PF21213 Primosomal protein N'-like, winged helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1198 Replication, recombination and repair (L) L Primosomal protein N' (replication factor Y) - superfamily II helicase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] Homologous recombination -

Protein Sequence

MTVVRVILPVPLTQTFDYLLPDNLPCPVAGARVIVPFGRQKQAVGIVAELAESSTFSPEKLKAVTECPDDDTLFPGDLWPLLNWAAQYYHYPLGEVLFHAMPILLRQGKEAAFTPLWRWEVTPEGAEIDIHTLKRSPKQQQALACLRRQPVYRHQTGEYELSDSALQGLKKKALIALNDVQPEAKDWRPDFAVTGERLKLNTEQATAVGAIRAEQHQFSPWLLDGVTGSGKTEVYLSVLENVLAEGHQALVLVPEIGLTPQTISRFRARFHAPVDILHSGMNDSERLAVWLRAKRGDTAIVIGTRSSLFTPFASLGIIIIDEEHDGSYKQQDGWRYHARDLAVFRAKKNNIPIVMGTATPSLETLCNVRQKKYRLLPLTQRAGNAQLADQHLLDLKGLPLTTGLSQPLIKRIRHHLAADNQVILFLNRRGYSPTLLCHECGWIAECPRCDHFYTLHQNHRMLRCHQCDSQRPVPKQCPKCGSTQLVPVGLGTEQLEDGITPLFPDIPVTRLDRDTTSRKGELEQHLAAVHQGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSGDFRAAERFAQLYTQVSGRAGRAGKRGEVVLQTHHPEHPLLTVLLDKGYGAFAVQALNERQSVCLPPYTSQVMIRAEDQNNQRAGAFLQTVRQLFESHPLRDEHFWLMGPLPAIQAKRGGRFRWQLLLQHPSRSQLQKIVAQAIPHIQQLPESRKVRWNVDVDPTDG

Flanking regions ( +/- flanking 50bp)

GCTGTTGTGCTTTTGCGCGCGCAGCCCTGTTGCCTATTGTGGAAATTATCATGACAGTCGTCCGGGTCATCTTGCCAGTCCCTCTGACACAAACGTTTGATTATTTATTGCCTGATAACCTGCCCTGTCCTGTGGCGGGTGCGCGGGTCATTGTGCCGTTCGGCAGGCAAAAACAGGCAGTCGGAATTGTTGCGGAACTGGCAGAGAGCAGCACTTTCAGCCCGGAAAAACTCAAAGCGGTCACAGAGTGTCCGGACGATGACACCTTGTTTCCGGGCGATTTATGGCCGCTGCTGAACTGGGCAGCACAGTATTATCATTATCCGTTAGGCGAAGTGCTGTTTCACGCCATGCCTATCCTGCTGCGCCAGGGCAAAGAAGCGGCATTCACACCGCTGTGGCGCTGGGAAGTCACCCCGGAAGGGGCAGAGATTGATATCCATACTCTGAAGCGCTCCCCGAAACAACAGCAGGCGCTGGCCTGCCTGCGCCGCCAGCCGGTTTACCGCCATCAGACCGGCGAATATGAATTAAGCGACAGCGCGTTACAGGGGCTGAAAAAGAAAGCCCTGATCGCACTCAATGATGTACAACCGGAAGCAAAAGACTGGCGGCCGGATTTTGCCGTCACCGGCGAGCGCCTGAAACTCAATACTGAGCAGGCAACCGCAGTCGGCGCTATCCGCGCGGAGCAGCATCAGTTTTCGCCGTGGCTGCTGGATGGCGTGACCGGTTCCGGCAAAACGGAAGTTTATCTGAGCGTACTGGAAAATGTGCTGGCAGAAGGTCATCAGGCACTGGTTCTGGTGCCGGAAATCGGGCTGACCCCGCAGACTATTTCCCGCTTCCGGGCGCGCTTTCATGCTCCGGTGGATATTCTCCATTCCGGTATGAATGACAGCGAACGCCTCGCGGTCTGGCTGCGGGCAAAGCGCGGCGATACCGCGATTGTGATCGGCACCCGCTCCTCGCTGTTCACGCCGTTTGCCTCCCTCGGTATTATTATTATTGATGAGGAGCACGACGGCTCTTACAAACAGCAGGATGGCTGGCGCTATCATGCCCGCGACCTCGCGGTTTTCCGCGCCAAGAAAAATAATATTCCTATCGTAATGGGAACCGCCACGCCTTCGCTGGAAACACTGTGCAATGTCAGACAGAAAAAATACCGTCTGCTGCCGCTGACACAACGGGCGGGAAATGCACAGCTTGCTGATCAACATCTGCTTGATCTGAAAGGTCTTCCGCTGACAACCGGCTTATCACAGCCGCTGATAAAACGGATCCGTCATCATCTGGCGGCGGATAATCAGGTCATTCTGTTTCTCAACCGCCGTGGCTATTCACCGACGCTACTGTGCCATGAGTGCGGCTGGATAGCAGAATGCCCGCGCTGCGATCACTTTTATACACTGCATCAGAACCATCGCATGCTGCGCTGCCATCAGTGTGACAGCCAGCGTCCGGTACCAAAGCAGTGCCCCAAGTGCGGCTCCACACAATTAGTGCCGGTCGGTCTGGGTACAGAGCAACTGGAAGATGGCATCACGCCGCTGTTCCCGGATATTCCGGTAACGCGGCTGGATCGCGATACCACCAGCCGAAAAGGTGAGCTGGAACAGCACCTGGCCGCAGTTCATCAGGGCGGTGCGCGGATCCTCATCGGTACGCAGATGCTGGCAAAAGGTCATCACTTTCCGGATGTGACACTGGTTGCACTGCTGGATGTGGATGGGGCACTGTTCTCCGGGGATTTCCGGGCAGCCGAGCGTTTTGCACAGTTATACACCCAGGTTTCCGGGCGGGCAGGTCGTGCCGGAAAGCGCGGGGAAGTGGTTTTACAGACCCACCATCCGGAACACCCGCTGCTGACGGTCCTGCTGGACAAAGGCTACGGTGCGTTTGCGGTACAGGCACTGAATGAGCGCCAGAGTGTCTGTCTGCCGCCTTATACCAGTCAGGTGATGATCCGCGCGGAAGATCAGAATAACCAGCGCGCAGGGGCATTCCTGCAAACCGTTCGTCAGTTGTTTGAATCACACCCTCTGCGGGATGAACATTTCTGGCTGATGGGACCGCTTCCGGCAATTCAGGCTAAGCGCGGCGGGCGTTTCCGCTGGCAGTTACTGTTACAGCACCCGTCACGCAGCCAGTTACAAAAAATTGTCGCACAGGCTATCCCGCATATTCAGCAGTTGCCCGAAAGCCGGAAAGTCCGCTGGAATGTTGATGTGGATCCGACTGATGGCTGATACTTTACTTACCGGACGGGAATGCGTGTAATATCGAAAAAATTGAGATA