Homologs in group_3313

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10830 FBDBKF_10830 89.1 Morganella morganii S1 ecfT ECF-type transporter transmembrane protein EcfT
NLDBIP_14995 NLDBIP_14995 89.1 Morganella morganii S4 ecfT ECF-type transporter transmembrane protein EcfT
LHKJJB_14350 LHKJJB_14350 89.1 Morganella morganii S3 ecfT ECF-type transporter transmembrane protein EcfT
HKOGLL_12970 HKOGLL_12970 89.1 Morganella morganii S5 ecfT ECF-type transporter transmembrane protein EcfT

Distribution of the homologs in the orthogroup group_3313

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3313

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44273 1.91e-05 47 33 2 110 4 HI_1620 Uncharacterized protein HI_1620 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
D5AUZ7 4e-05 47 28 2 133 1 cbiQ Cobalt transport protein CbiQ Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16920
Feature type CDS
Gene -
Product energy-coupling factor transporter transmembrane component T
Location 6677 - 7393 (strand: 1)
Length 717 (nucleotides) / 238 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3313
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF02361 Cobalt transport protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0619 Coenzyme transport and metabolism (H) H ECF-type transporter transmembrane protein EcfT

Protein Sequence

MDKWLAPHRRLLLAVLWAFLLSGIRQTDWLTAGLSGAFVLFVICRRHQLGHSLLTVLKLNIFVLFIWLTLPWKIESQGIVQSPAGIFLATQITLKMNAILLFVSAMLTNMADIDLACAVKRYPLPDKLIKLFILTIRYIAIFSETKQQLETAMKARGFKKGMNKRTFMMLSQLVALLLIKAMHKAETTEMALKARGFYARPSSITTKRCVNDSPKPVSSGQKPCCPSQHCADNSGSEL

Flanking regions ( +/- flanking 50bp)

AAAAATGCGTCCGGCATCACTGGCGGTCAATCAGACTGGTCAGCACAGCTATGGATAAGTGGCTTGCCCCGCACCGGCGTTTGCTTCTTGCTGTTCTCTGGGCATTTCTTCTCAGTGGCATCCGGCAGACCGACTGGCTGACAGCCGGTCTGTCCGGTGCCTTTGTGCTGTTTGTTATCTGCCGCCGCCATCAGTTAGGTCACTCACTGCTGACCGTTCTCAAGCTGAATATCTTTGTTTTATTCATCTGGCTGACGCTGCCGTGGAAAATCGAGAGTCAGGGAATTGTGCAATCTCCGGCAGGCATTTTTCTGGCGACGCAAATTACGCTGAAGATGAATGCGATTTTACTGTTTGTCTCCGCCATGCTGACCAACATGGCAGATATAGACCTCGCTTGTGCGGTAAAACGCTATCCTCTGCCGGATAAGCTCATCAAGCTGTTTATCCTGACAATCCGCTATATCGCTATTTTCAGTGAAACCAAACAACAGCTTGAAACCGCCATGAAAGCCCGGGGATTCAAAAAAGGGATGAACAAACGGACATTTATGATGCTGTCCCAGTTAGTCGCCCTGCTGCTTATCAAAGCCATGCATAAAGCGGAAACGACAGAAATGGCACTGAAAGCCCGTGGTTTCTATGCGCGTCCATCTTCAATTACGACAAAAAGGTGTGTTAATGACTCCCCAAAGCCCGTTAGTTCAGGTCAAAAACCTTGTTGTCCGTCGCAACACTGCGCCGATAATTCAGGATCTGAACTTTGACCTGAACGCCGGAGAACGATTGTTCCTGTGTGGTGATATCGGCAGCGGGA