Homologs in group_1784

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13010 FBDBKF_13010 92.8 Morganella morganii S1 cueR Cu(I)-responsive transcriptional regulator
EHELCC_06325 EHELCC_06325 92.8 Morganella morganii S2 cueR Cu(I)-responsive transcriptional regulator
NLDBIP_06645 NLDBIP_06645 92.8 Morganella morganii S4 cueR Cu(I)-responsive transcriptional regulator
LHKJJB_03525 LHKJJB_03525 92.8 Morganella morganii S3 cueR Cu(I)-responsive transcriptional regulator
HKOGLL_07000 HKOGLL_07000 92.8 Morganella morganii S5 cueR Cu(I)-responsive transcriptional regulator
PMI_RS10705 PMI_RS10705 72.7 Proteus mirabilis HI4320 cueR Cu(I)-responsive transcriptional regulator

Distribution of the homologs in the orthogroup group_1784

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1784

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q93CH6 2.42e-64 195 67 0 132 1 cueR HTH-type transcriptional regulator CueR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z8S3 2.85e-64 195 66 0 132 3 cueR HTH-type transcriptional regulator CueR Salmonella typhi
Q8ZCA8 4.51e-63 192 66 0 133 3 cueR HTH-type transcriptional regulator CueR Yersinia pestis
P0A9G5 6.05e-61 186 65 0 132 3 cueR HTH-type transcriptional regulator CueR Shigella flexneri
P0A9G4 6.05e-61 186 65 0 132 1 cueR HTH-type transcriptional regulator CueR Escherichia coli (strain K12)
Q8FK74 1.5e-60 185 64 0 132 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8XD09 1.57e-60 185 64 0 132 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O157:H7
P0C6D2 6.44e-42 138 47 0 130 3 cueR HTH-type transcriptional regulator CueR Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F2W6 6.44e-42 138 47 0 130 3 cueR HTH-type transcriptional regulator CueR Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9HV30 4.82e-36 123 43 0 132 3 PA4778 Uncharacterized HTH-type transcriptional regulator PA4778 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9X5V4 8e-32 112 41 1 130 4 hmrR HTH-type transcriptional regulator HmrR Rhizobium leguminosarum bv. viciae
P58379 1.39e-28 105 37 0 129 3 hmrR2 Heavy metal-dependent transcription regulator 2 Rhizobium meliloti (strain 1021)
Q9X5X4 1.06e-26 100 35 0 129 1 hmrR HTH-type transcriptional regulator HmrR Sinorhizobium medicae (strain WSM419)
P58378 6.51e-25 95 33 1 136 3 hmrR1 Heavy metal-dependent transcription regulator 1 Rhizobium meliloti (strain 1021)
P44617 1.12e-23 92 37 0 128 3 HI_0293 Probable heavy metal-dependent transcriptional regulator HI_0293 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P22853 9.67e-22 87 36 1 125 1 merR1 Mercuric resistance operon regulatory protein Bacillus cereus
P22874 2.51e-21 86 35 1 130 4 merR Mercuric resistance operon regulatory protein Staphylococcus aureus
P0ACS5 4.11e-19 80 31 2 138 1 zntR HTH-type transcriptional regulator ZntR Escherichia coli (strain K12)
P0ACS6 4.11e-19 80 31 2 138 3 zntR HTH-type transcriptional regulator ZntR Escherichia coli O157:H7
Q55963 2.37e-16 73 31 0 112 4 slr0701 Uncharacterized HTH-type transcriptional regulator slr0701 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P45277 3.94e-13 65 28 0 128 3 zntR HTH-type transcriptional regulator ZntR homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P22896 5.29e-13 64 30 0 113 4 merR Mercuric resistance operon regulatory protein (Fragment) Acidithiobacillus ferrooxidans
P69413 3.17e-11 60 28 2 130 3 merR Mercuric resistance operon regulatory protein Pseudomonas sp.
P0A184 3.17e-11 60 28 2 130 3 merR Mercuric resistance operon regulatory protein Pseudomonas fluorescens
P0A183 3.17e-11 60 28 2 130 1 merR Mercuric resistance operon regulatory protein Pseudomonas aeruginosa
P13111 4.17e-11 60 27 2 129 4 merR Mercuric resistance operon regulatory protein Serratia marcescens
P0A2Q9 1.38e-10 58 27 2 129 4 merR Mercuric resistance operon regulatory protein Shigella flexneri
P0A2Q8 1.38e-10 58 27 2 129 3 merR Mercuric resistance operon regulatory protein Salmonella typhi
O06474 7.99e-10 56 39 1 73 2 yfmP HTH-type transcriptional regulator YfmP Bacillus subtilis (strain 168)
P37510 8.93e-09 53 32 0 85 4 yyaN Uncharacterized HTH-type transcriptional regulator YyaN Bacillus subtilis (strain 168)
O06008 2.4e-08 52 28 2 111 1 adhR HTH-type transcriptional regulator AdhR Bacillus subtilis (strain 168)
P0A4T9 1.35e-05 46 33 0 66 1 tipA HTH-type transcriptional activator TipA Streptomyces lividans
P0A4T8 1.35e-05 46 33 0 66 3 tipA HTH-type transcriptional activator TipA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P71039 1.92e-05 45 27 1 106 1 mta HTH-type transcriptional activator mta Bacillus subtilis (strain 168)
P50329 5.26e-05 44 26 0 67 4 nolA Nodulation protein NolA (Fragment) Bradyrhizobium elkanii
P50330 0.000126 43 24 2 105 4 nolA Nodulation protein NolA Bradyrhizobium sp. (strain NC92)
P22537 0.000233 42 26 2 103 2 nolA Nodulation protein NolA Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P44558 0.000342 41 29 1 85 1 HI_0186 Uncharacterized HTH-type transcriptional regulator HI_0186 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0ACS4 0.000495 41 26 5 125 3 soxR Redox-sensitive transcriptional activator SoxR Shigella flexneri
P0ACS2 0.000495 41 26 5 125 1 soxR Redox-sensitive transcriptional activator SoxR Escherichia coli (strain K12)
P0ACS3 0.000495 41 26 5 125 3 soxR Redox-sensitive transcriptional activator SoxR Escherichia coli O157:H7
G2RUZ1 0.000853 40 32 2 85 1 tnrA HTH-type transcriptional regulator TnrA Priestia megaterium (strain WSH-002)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16195
Feature type CDS
Gene cueR
Product Cu(I)-responsive transcriptional regulator
Location 47226 - 47645 (strand: -1)
Length 420 (nucleotides) / 139 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1784
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13411 MerR HTH family regulatory protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0789 Transcription (K) K DNA-binding transcriptional regulator, MerR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19591 MerR family transcriptional regulator, copper efflux regulator - Multidrug resistance, efflux pump MexPQ-OpmE

Protein Sequence

MNISDIAQKTGLTPKAIRFYEDKSLITPPDRGENGYRYFSERHLDELTLLRQAKEVGFTLDECRELLALFRNPNRHAADVKSATLSKAKQIEKTITELSAIRDRLLVLAESCPGDDSADCPIIEHLSGGCRHSKPACHK

Flanking regions ( +/- flanking 50bp)

ATTTAAGATGATGGTAAACCTTCCTTCAAGGGTAAGGTCAAGGAGAAGTTATGAATATCAGTGATATTGCACAAAAAACGGGTTTAACGCCAAAAGCTATCCGTTTTTACGAAGATAAATCTTTGATAACACCCCCGGATCGGGGTGAGAACGGCTACCGCTATTTCAGTGAACGCCACCTGGATGAGCTGACATTGTTGCGTCAGGCGAAAGAAGTGGGCTTTACGCTTGATGAGTGCCGCGAACTGCTGGCACTGTTTCGTAATCCGAACCGCCATGCGGCAGATGTGAAATCTGCCACACTGAGTAAAGCGAAGCAGATTGAAAAAACCATTACGGAGCTGAGTGCTATCCGTGACCGCCTGCTGGTGCTGGCGGAATCCTGTCCGGGCGACGACAGCGCAGACTGCCCGATTATTGAACATCTTTCAGGGGGCTGCCGCCACAGTAAACCCGCCTGTCATAAGTAATATTTTCCTCAGTGCGTCTGCCGGTCCCGGCGGGCGCCTTTTTCATCTGA