Homologs in group_1085

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06165 FBDBKF_06165 85.5 Morganella morganii S1 recC exodeoxyribonuclease V subunit gamma
EHELCC_09210 EHELCC_09210 85.5 Morganella morganii S2 recC exodeoxyribonuclease V subunit gamma
NLDBIP_09590 NLDBIP_09590 85.5 Morganella morganii S4 recC exodeoxyribonuclease V subunit gamma
LHKJJB_08165 LHKJJB_08165 85.5 Morganella morganii S3 recC exodeoxyribonuclease V subunit gamma
HKOGLL_07715 HKOGLL_07715 85.5 Morganella morganii S5 recC exodeoxyribonuclease V subunit gamma
PMI_RS11430 PMI_RS11430 60.0 Proteus mirabilis HI4320 recC exodeoxyribonuclease V subunit gamma

Distribution of the homologs in the orthogroup group_1085

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1085

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P07648 0.0 1199 53 3 1126 1 recC RecBCD enzyme subunit RecC Escherichia coli (strain K12)
P44945 0.0 652 39 21 962 3 recC RecBCD enzyme subunit RecC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57528 5.89e-167 525 26 9 1124 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AB4 1.34e-118 396 24 19 1128 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9B0 3.4e-103 353 25 14 799 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q8K9B0 3.1e-24 114 28 4 247 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A0QS30 1.58e-94 329 28 29 1071 3 recC RecBCD enzyme subunit RecC Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WIQ5 1.14e-93 327 29 27 934 1 recC RecBCD enzyme subunit RecC Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIQ4 5.17e-93 325 29 27 934 3 recC RecBCD enzyme subunit RecC Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8ERW6 4.31e-05 51 22 18 408 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)
B8ZQ31 5.08e-05 51 24 5 169 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1)
Q8DPR7 5.26e-05 51 24 5 169 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q97QQ0 5.26e-05 51 24 5 169 3 rexB Exonuclease/helicase subunit RexB Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q04KF9 5.26e-05 51 24 5 169 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
B5E4P4 5.39e-05 51 24 5 169 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae serotype 19F (strain G54)
B2IPX4 5.53e-05 51 23 4 164 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae (strain CGSP14)
B1IBR5 5.63e-05 51 24 5 169 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae (strain Hungary19A-6)
B9DIT7 0.000892 47 27 5 116 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Staphylococcus carnosus (strain TM300)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15750
Feature type CDS
Gene recC
Product exodeoxyribonuclease V subunit gamma
Location 150684 - 154085 (strand: 1)
Length 3402 (nucleotides) / 1133 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1085
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04257 Exodeoxyribonuclease V, gamma subunit
PF17946 RecC C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1330 Replication, recombination and repair (L) L Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03583 exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] Homologous recombination -

Protein Sequence

MFTIYHSNDLDLLKDVICHIIDTDKIADPFRPETVLVQSPGMSQWLQIALAEKLGIAANIDFPLPATFIWDMFTRVLPGIPKESAFSKGAMTWKLMSLLPQRLDDPDFTPLRHYLDDDNDKRKLHQLSGRIADLFDQYLVYRPDWLTAWEGDKLVDGLSQNQTWQKSLWQDLQTLTRTLDQPEWHRANLYQRFIDVLDKGDPQVVANLPPRLFICGISALPPVYLQALRALGQHTHIHLMFTNPCQYYWGDIQNPASLRRMLARKPQSYWDKKAVSWFKSDDDAPSLFNFEADGEQNIGNPLLASWGRLGRDNLWFLEEIEDAHVIKAFVDYTPDTLLTTVQQDILDLADYSRVGKTKEEFSVSEDRRILADNDRSLSFHSCHSPQREVEVLQDYLLNLLENNPLLTPRDIIVMVADIDSYSPYIQAVFGHGNDNRYLPFAISDRKARQAHPVLQAVLTLLELPQSRFTSEHVLSLLEVPAIAQQFGLDESDLPLLRRWVSGSGVRWGLDDDNIESFSLPVFGQNTWKFGLERMLLGYAMAQQEGTWRGILPYDDASGIAAGRVGQLAAFIDTLSRWQEILSETRTPVQWRETGAELLSAFFATTPDTEPVLSMVLQQWQQVLEQAVKACYDDEVPLSLIRDELSLRLDDEKISQRFLSGAINFCTLMPMRSIPFKVVCLLGMNDGVYPRNIPPLGFDLMAEQARRGDRKRRDDDRYLFLEALGSAKEHLYISYIGRSIRDNEERNPSVLVSELLEYIGLNFCLKKDRSANLDISRKAIEHHLTVCHSRVPFAAENYREGAEFQSFSPQWLPAALGQGRAQGPFNVPVPAESVTDITLEKLLRFYRHPIRAFFQQRLKVHFDIEDVALPEEEPFSVDNLQRYGFNTQLLDALVDGESEEQVFTTLKAAGSLPAGAFAQVYWEDQLQEMDVLAETVRRERAESESELFHYVVGPYTLTGQLAGVQNDGLLRWRAAALTAVDGLRLWIEHLVYSLSDRQQFSRSFGRNDSAWIFEPLTAAQAQQYLQPLLDVFAQGLNEPLPVFIKSGWAWLSTLADEKSGELSDDEALQHKAASLLLQTLQGGFQFNGEAEDDYVVRAFRHFDTELLGVIKQLSQQLFLPMFHHQKNRENQADA

Flanking regions ( +/- flanking 50bp)

AGAGCGTCAGTTAACCGCCAGCCGATGGCAATGCATGCAAGGGCAGAAAAATGTTTACGATTTATCACTCCAATGATTTGGATCTGCTGAAAGATGTTATCTGCCATATTATTGATACTGATAAGATTGCGGATCCATTCCGCCCGGAAACGGTTCTCGTGCAAAGTCCGGGAATGTCGCAGTGGTTACAGATTGCGCTGGCGGAAAAACTGGGTATTGCAGCAAATATTGATTTCCCGCTGCCCGCAACCTTTATCTGGGATATGTTTACCCGTGTATTGCCGGGTATCCCGAAAGAGAGTGCATTCAGTAAGGGGGCAATGACATGGAAACTGATGTCGCTGTTACCGCAGCGCCTTGACGATCCGGATTTTACCCCTCTGCGCCACTATCTTGATGATGATAACGATAAGCGCAAACTTCACCAGCTTTCAGGCCGTATTGCGGACTTATTTGACCAATATTTGGTTTACCGTCCTGACTGGCTGACAGCGTGGGAAGGCGACAAGCTGGTTGACGGACTGAGTCAGAACCAGACCTGGCAAAAATCGCTGTGGCAGGATTTACAGACACTGACGCGCACGCTGGATCAGCCTGAGTGGCATCGTGCGAATCTTTATCAGCGTTTTATTGATGTGCTGGATAAGGGCGATCCACAGGTTGTGGCAAATCTGCCTCCCCGTCTGTTTATCTGTGGTATTTCTGCATTACCGCCTGTTTATTTACAGGCACTGCGCGCACTCGGGCAGCATACCCACATTCATCTGATGTTTACCAATCCCTGCCAATATTACTGGGGCGATATTCAGAACCCGGCATCACTGCGCCGGATGCTGGCGCGTAAGCCGCAAAGCTATTGGGATAAGAAGGCTGTCAGTTGGTTTAAATCTGACGACGATGCGCCTTCACTTTTTAATTTTGAAGCCGATGGTGAGCAGAATATAGGTAATCCGCTGCTGGCGTCCTGGGGACGTTTAGGGCGGGATAATCTCTGGTTTCTGGAAGAGATTGAAGATGCCCATGTTATTAAAGCGTTTGTTGACTACACGCCGGATACATTACTGACCACTGTTCAGCAGGATATTCTTGATTTGGCGGACTACAGCCGTGTGGGTAAGACGAAAGAAGAGTTCTCGGTGAGTGAAGACCGGCGGATTCTTGCAGATAACGACCGCTCCCTGAGCTTCCACTCCTGTCATAGTCCTCAGCGGGAAGTGGAGGTTTTACAGGATTACTTACTGAATCTACTGGAGAATAATCCGCTGCTCACACCGCGTGACATTATTGTGATGGTGGCGGATATCGACAGTTACTCTCCGTATATTCAGGCGGTATTTGGTCATGGTAATGACAACCGCTACCTGCCATTTGCTATTTCTGACCGCAAAGCCCGTCAGGCACATCCTGTTTTACAAGCGGTATTAACTTTGCTGGAACTGCCGCAGAGCCGTTTCACATCAGAACATGTGCTCAGTCTGCTGGAAGTGCCTGCGATTGCACAACAGTTTGGTCTGGATGAAAGCGACCTGCCGCTGTTACGCCGCTGGGTCAGTGGTTCGGGCGTTCGCTGGGGGCTGGATGATGACAACATCGAATCTTTTTCATTGCCGGTTTTTGGTCAGAATACCTGGAAATTCGGGCTGGAACGTATGTTGCTCGGGTATGCTATGGCGCAGCAGGAAGGCACCTGGCGCGGGATACTCCCGTATGATGATGCATCCGGTATTGCCGCCGGAAGAGTCGGTCAGCTCGCGGCATTTATTGATACCCTGAGCCGGTGGCAGGAAATTCTGAGTGAAACCCGTACGCCGGTGCAATGGCGTGAAACCGGTGCTGAACTGCTTTCTGCTTTTTTTGCAACAACGCCGGATACCGAGCCTGTGCTCAGCATGGTACTGCAACAGTGGCAGCAGGTACTGGAGCAGGCAGTAAAAGCCTGTTATGACGATGAAGTGCCACTTTCCCTGATCCGTGACGAGCTGTCTCTGCGGCTGGATGATGAAAAAATCAGTCAGCGCTTTTTATCGGGTGCGATTAACTTTTGTACACTGATGCCGATGCGTTCGATCCCGTTTAAGGTTGTTTGTCTGTTGGGGATGAATGACGGTGTATATCCGCGCAATATTCCGCCGCTGGGTTTTGATTTGATGGCAGAGCAGGCACGTCGCGGCGACCGCAAGCGCCGGGATGATGACCGCTATCTTTTCCTTGAGGCTCTGGGCTCTGCAAAAGAACATTTATATATCAGTTATATCGGGCGTTCTATCCGCGATAACGAAGAGCGCAATCCATCGGTCTTAGTTAGTGAGTTACTGGAATATATCGGGTTAAATTTTTGCCTGAAAAAAGACCGTTCTGCAAATTTGGATATCAGCCGGAAAGCCATTGAGCACCATCTGACTGTCTGCCATTCCCGTGTTCCCTTTGCGGCGGAAAATTACCGGGAAGGTGCTGAATTTCAGAGCTTTTCGCCTCAGTGGCTGCCTGCGGCGCTGGGACAGGGACGGGCACAGGGGCCATTTAATGTGCCGGTTCCGGCTGAGTCTGTGACGGATATTACACTGGAGAAGCTTTTACGGTTTTATCGTCACCCGATCCGCGCCTTTTTTCAGCAGCGTCTGAAAGTCCATTTTGATATTGAAGATGTTGCACTGCCGGAAGAAGAGCCGTTCAGCGTTGATAACTTACAGCGCTACGGGTTTAACACTCAGTTGCTTGACGCGCTGGTGGACGGTGAGTCAGAAGAACAGGTTTTCACCACCCTGAAAGCCGCCGGGTCGTTACCTGCAGGGGCATTTGCACAGGTTTACTGGGAAGATCAGTTACAGGAAATGGATGTACTGGCGGAGACAGTCCGCCGGGAGCGGGCAGAATCAGAGAGTGAGCTGTTTCACTATGTTGTGGGACCTTATACATTAACCGGGCAATTAGCGGGTGTTCAGAATGACGGATTGCTGCGCTGGCGTGCCGCCGCACTGACTGCAGTTGACGGGCTGAGACTGTGGATTGAGCATCTGGTTTACAGCCTGAGTGACCGGCAGCAATTCAGCCGGTCGTTCGGGCGTAATGATAGCGCATGGATTTTTGAACCGCTGACAGCCGCACAGGCGCAACAGTATCTGCAACCATTACTGGATGTGTTTGCTCAGGGGCTTAATGAACCATTGCCTGTTTTTATTAAGAGTGGCTGGGCATGGCTGAGCACACTGGCAGATGAAAAAAGTGGTGAACTCTCTGATGATGAAGCACTCCAACATAAAGCCGCATCGCTGCTGCTACAGACATTGCAGGGTGGTTTTCAGTTTAATGGTGAAGCAGAGGATGACTATGTGGTTCGTGCATTCCGCCATTTTGATACAGAACTTCTCGGGGTGATTAAGCAGCTTTCGCAACAATTATTTTTGCCGATGTTCCATCATCAGAAAAACAGGGAGAATCAGGCTGATGCCTAAACAACTAGTGCAGTTTATCTTTACACTGCTTTTCTTTTTTACCGGCGCGA