Homologs in group_2701

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06170 FBDBKF_06170 72.7 Morganella morganii S1 pilV Type IV pilus assembly protein PilV
EHELCC_09215 EHELCC_09215 72.7 Morganella morganii S2 pilV Type IV pilus assembly protein PilV
NLDBIP_09595 NLDBIP_09595 72.7 Morganella morganii S4 pilV Type IV pilus assembly protein PilV
LHKJJB_08160 LHKJJB_08160 72.7 Morganella morganii S3 pilV Type IV pilus assembly protein PilV
HKOGLL_07710 HKOGLL_07710 72.7 Morganella morganii S5 pilV Type IV pilus assembly protein PilV

Distribution of the homologs in the orthogroup group_2701

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2701

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08372 0.000212 41 30 5 111 3 ppdC Prepilin peptidase-dependent protein C Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15745
Feature type CDS
Gene -
Product prepilin-type N-terminal cleavage/methylation domain-containing protein
Location 150341 - 150709 (strand: 1)
Length 369 (nucleotides) / 122 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2701
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF07963 Prokaryotic N-terminal methylation motif
PF12528 Type II secretion prepilin peptidase dependent protein C

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4967 Cell motility (N)
Extracellular structures (W)		 NW Type IV pilus assembly protein PilV

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02681 prepilin peptidase dependent protein C - -

Protein Sequence

MNERGMSLPEVLICAFVFAVLMTGLLRYHQLLNSGKHRQYDDVRTVRRLHQLMRFTADPGTLQQMMKMPLSSRRQWENKQENVAQGCVSVTIRLVSSGERQLTASRWQCMQGQKNVYDLSLQ

Flanking regions ( +/- flanking 50bp)

TCCGGATCTTAAACCGGATTGTGGCGGGCACAGTGAGACAGGAGGACAAAATGAATGAGCGGGGTATGTCGTTACCGGAAGTGCTTATCTGTGCCTTTGTTTTTGCGGTATTGATGACCGGCTTATTGCGTTATCATCAGCTCCTGAACAGCGGAAAACACCGGCAGTATGATGATGTCAGAACAGTACGCCGGTTACATCAGCTGATGCGGTTTACCGCAGATCCCGGTACATTACAGCAGATGATGAAAATGCCGTTATCCTCCCGGCGGCAGTGGGAAAATAAACAGGAAAATGTGGCACAAGGCTGTGTTTCCGTTACTATCCGTTTAGTCTCTTCCGGAGAGCGTCAGTTAACCGCCAGCCGATGGCAATGCATGCAAGGGCAGAAAAATGTTTACGATTTATCACTCCAATGATTTGGATCTGCTGAAAGATGTTATCTGCCATATTATTGATACTGATAAGA