Homologs in group_1154

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06610 FBDBKF_06610 92.8 Morganella morganii S1 ahpA YtjB family periplasmic protein
EHELCC_09655 EHELCC_09655 92.8 Morganella morganii S2 ahpA YtjB family periplasmic protein
NLDBIP_10035 NLDBIP_10035 92.8 Morganella morganii S4 ahpA YtjB family periplasmic protein
LHKJJB_07720 LHKJJB_07720 92.8 Morganella morganii S3 ahpA YtjB family periplasmic protein
HKOGLL_07270 HKOGLL_07270 92.8 Morganella morganii S5 ahpA YtjB family periplasmic protein
PMI_RS12395 PMI_RS12395 60.3 Proteus mirabilis HI4320 - YtjB family periplasmic protein

Distribution of the homologs in the orthogroup group_1154

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1154

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZIQ1 2.35e-84 253 61 1 218 3 smp Protein Smp Yersinia pestis
P0AGC8 1.06e-71 220 59 1 203 3 smp Protein Smp Shigella flexneri
P0AGC7 1.06e-71 220 59 1 203 2 ytjB Probable inner membrane protein Smp Escherichia coli (strain K12)
P60777 1.06e-71 220 59 1 203 3 smp Protein Smp Escherichia coli O157:H7
Q8Z0T9 3.09e-69 214 57 1 203 3 smp Protein Smp Salmonella typhi
Q8ZJV0 7e-68 210 56 1 203 3 smp Protein Smp Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9L8J3 6.06e-12 66 29 2 174 3 ahpA Protein AhpA Pasteurella multocida (strain Pm70)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15335
Feature type CDS
Gene -
Product YtjB family periplasmic protein
Location 50737 - 51411 (strand: -1)
Length 675 (nucleotides) / 224 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1154
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF10144 Bacterial virulence factor haemolysin

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3726 Function unknown (S) S Uncharacterized membrane protein Smp affecting hemolysin expression

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07186 membrane protein - -

Protein Sequence

MAKTKLTFRLHKTAIILICLALMVCLLQGVSYFSRVHQQSSMEQFNELAYSLAQQVAFNLSDAIDDNGKVLNKKQITANLAQLTTNSRILDATVYQDDGVQIATTGENITVRDRLALDGQKAGSYFNHQIVATIPGKNGPKGFLRLTIDTHRLATESTQVDNTTNLLRVMLLLALAIGFVLANNLLQLTPSRWQQSLYLLTANLKNDEETPEKKPEDKKDNGQK

Flanking regions ( +/- flanking 50bp)

CAGCATCGCTTCTGGCAATATGATGACGACAACAGAAAAACGGATAAAAAATGGCCAAAACGAAGTTAACATTCCGGCTGCATAAGACAGCCATTATTCTGATTTGTCTCGCCCTGATGGTCTGCCTGTTACAGGGCGTTTCCTATTTCAGCCGCGTGCATCAGCAATCGTCTATGGAACAGTTTAATGAACTGGCCTATTCGCTGGCACAACAAGTGGCATTTAACCTTTCCGATGCTATAGACGATAACGGGAAAGTCCTCAATAAGAAACAGATCACGGCAAATTTAGCGCAACTGACGACAAACAGCCGTATTCTGGATGCCACAGTGTATCAGGATGACGGGGTTCAGATAGCCACAACCGGCGAAAATATTACGGTACGCGACCGGCTGGCGCTGGACGGACAGAAAGCAGGCAGCTATTTCAATCATCAGATTGTCGCCACCATTCCCGGGAAAAACGGGCCGAAAGGCTTTTTGCGCCTGACTATCGACACCCACCGCCTGGCGACAGAATCCACGCAGGTGGATAATACCACCAACCTGCTGCGCGTGATGTTACTGCTGGCGCTGGCGATTGGTTTTGTGCTGGCCAATAACCTGTTGCAACTGACACCAAGCCGCTGGCAGCAGTCACTCTATCTCCTGACCGCCAATCTGAAAAATGATGAAGAGACACCGGAGAAGAAACCGGAAGATAAGAAAGATAACGGGCAGAAATGATTTATCTGACTCCATTCATTTTTTAATTAGTCCCTGTCTGTTTATATGAC