Homologs in group_1706

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11890 FBDBKF_11890 86.1 Morganella morganii S1 srkA serine/threonine protein kinase
EHELCC_14415 EHELCC_14415 86.1 Morganella morganii S2 srkA serine/threonine protein kinase
NLDBIP_15510 NLDBIP_15510 86.1 Morganella morganii S4 srkA serine/threonine protein kinase
LHKJJB_15100 LHKJJB_15100 86.1 Morganella morganii S3 srkA serine/threonine protein kinase
HKOGLL_14220 HKOGLL_14220 86.1 Morganella morganii S5 srkA serine/threonine protein kinase
PMI_RS13975 PMI_RS13975 56.2 Proteus mirabilis HI4320 - serine/threonine protein kinase

Distribution of the homologs in the orthogroup group_1706

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1706

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0C0K3 8.21e-145 414 59 0 318 1 srkA Stress response kinase A Escherichia coli (strain K12)
P0C0K4 8.21e-145 414 59 0 318 3 srkA Stress response kinase A Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X8H9 4.99e-144 412 58 0 318 3 srkA Stress response kinase A Escherichia coli O157:H7
Q83IV7 1.22e-143 411 58 0 318 2 srkA Stress response kinase A Shigella flexneri
Q8ZKU8 1.63e-143 411 58 0 318 1 rdoA Serine/threonine protein kinase RdoA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57HL7 3.1e-143 410 58 0 318 3 srkA Stress response kinase A Salmonella choleraesuis (strain SC-B67)
Q8Z2S0 1.24e-142 409 58 0 318 3 srkA Stress response kinase A Salmonella typhi
Q5PKB8 1.24e-142 409 58 0 318 3 srkA Stress response kinase A Salmonella paratyphi A (strain ATCC 9150 / SARB42)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14765
Feature type CDS
Gene -
Product serine/threonine protein kinase
Location 187234 - 188229 (strand: 1)
Length 996 (nucleotides) / 331 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1706
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01636 Phosphotransferase enzyme family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2334 Signal transduction mechanisms (T) T Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist

Protein Sequence

MQTITPPVFTFQDFRPDRLIDSLSRYGIWLDSGLTELNSYENRVYQFMDENRTRYVVKFYRPARWSEQQIREEHELTLSLADAGLPVAAPLVFDGETLLSQDGYMFALFPSIGGRAYETDNIDQLESTGRLLGRLHQIGREREFQYRPSITSQEYLIAPREILAECPLIPKKVRSSFLQALDTLIAEVTARWTGEWQSIRLHGDCHPGNILWRDEPWLVDFDDARNGPAVQDLWMLLNGDNDSRRYQLDILLEAYQEFCDFDTRELALIEPLRAMRMVHFLSWVARRWQDPAFPKAFPWMADSDFWSQQQSLITEQIAVLAEPPLTRYQPY

Flanking regions ( +/- flanking 50bp)

TTAAAACCGCGCTGTTACGTGCACGCGGCATTATCAAAGAGTAAAGAGTAATGCAGACTATCACACCGCCGGTTTTTACCTTTCAGGATTTCCGGCCTGATCGTCTGATAGACAGTCTGAGCCGTTACGGTATCTGGCTGGACTCCGGTTTAACCGAGCTGAACAGCTACGAAAACCGGGTCTATCAGTTTATGGATGAAAACCGCACCCGTTATGTGGTGAAATTTTATCGTCCCGCGCGCTGGAGTGAGCAGCAGATCCGCGAGGAGCATGAGCTGACACTGTCTCTGGCTGATGCCGGGTTGCCGGTCGCCGCCCCGCTGGTGTTTGATGGCGAAACCTTGCTGTCGCAGGACGGGTATATGTTCGCGCTCTTTCCGTCGATAGGCGGGCGGGCGTATGAAACGGATAATATTGACCAGTTGGAAAGTACCGGGCGTTTGCTCGGACGACTGCATCAGATTGGACGGGAGCGTGAGTTTCAGTACCGTCCGTCGATTACGTCGCAGGAGTATCTGATAGCTCCCCGGGAGATCCTTGCAGAATGCCCGCTTATTCCTAAAAAAGTGCGGAGCAGCTTTTTACAGGCGCTGGATACCCTGATCGCGGAGGTAACTGCGCGCTGGACCGGCGAATGGCAATCTATCCGGTTACACGGCGATTGCCATCCGGGAAATATTTTGTGGCGTGATGAGCCGTGGCTGGTCGATTTCGACGATGCCCGCAACGGACCGGCAGTGCAGGATCTCTGGATGTTACTTAACGGGGATAATGATTCACGTCGCTATCAGTTAGATATTTTGCTGGAGGCGTATCAGGAATTTTGTGATTTTGATACGCGGGAACTGGCATTAATTGAGCCGCTGCGCGCTATGCGTATGGTTCACTTTTTATCCTGGGTAGCACGCCGCTGGCAGGATCCCGCTTTTCCGAAAGCTTTTCCATGGATGGCGGATAGTGATTTCTGGTCACAACAGCAGTCACTGATTACTGAACAGATAGCCGTACTGGCGGAACCGCCGCTGACGCGTTATCAGCCTTATTGATTTTCAGGAGATACAATGATGAAGAAGTTTTGGTTAGCAATGATGGGATT