COG2334


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2334, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG2334 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1706 FBDBKF_11890 29236 30231 -1 srkA serine/threonine protein kinase Morganella morganii S1
1 group_1706 EHELCC_14415 104474 105469 1 srkA serine/threonine protein kinase Morganella morganii S2
2 group_1706 NLDBIP_15510 108411 109406 1 srkA serine/threonine protein kinase Morganella morganii S4
3 group_1706 LHKJJB_15100 29236 30231 -1 srkA serine/threonine protein kinase Morganella morganii S3
4 group_1706 HKOGLL_14220 15899 16894 -1 srkA serine/threonine protein kinase Morganella morganii S5
5 group_1706 F4V73_RS14765 187234 188229 1 serine/threonine protein kinase Morganella psychrotolerans
6 group_1706 PMI_RS13975 3104321 3105316 -1 serine/threonine protein kinase Proteus mirabilis HI4320