Homologs in group_1619

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10680 FBDBKF_10680 91.3 Morganella morganii S1 glpD glycerol-3-phosphate dehydrogenase
EHELCC_15015 EHELCC_15015 91.3 Morganella morganii S2 glpD glycerol-3-phosphate dehydrogenase
NLDBIP_14845 NLDBIP_14845 91.3 Morganella morganii S4 glpD glycerol-3-phosphate dehydrogenase
LHKJJB_14500 LHKJJB_14500 91.3 Morganella morganii S3 glpD glycerol-3-phosphate dehydrogenase
HKOGLL_13120 HKOGLL_13120 91.3 Morganella morganii S5 glpD glycerol-3-phosphate dehydrogenase
PMI_RS14485 PMI_RS14485 78.4 Proteus mirabilis HI4320 glpD glycerol-3-phosphate dehydrogenase

Distribution of the homologs in the orthogroup group_1619

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1619

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13035 0.0 744 77 1 490 1 glpD Aerobic glycerol-3-phosphate dehydrogenase Escherichia coli (strain K12)
P52111 0.0 566 60 2 475 3 glpD Glycerol-3-phosphate dehydrogenase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O83004 0.0 552 59 1 472 3 glpD Glycerol-3-phosphate dehydrogenase Pseudomonas tolaasii
Q2YIQ2 1e-180 519 52 2 497 1 eryB D-erythritol 1-phosphate dehydrogenase Brucella abortus (strain 2308)
P53435 7.26e-60 209 33 10 471 3 glpD Glycerol-3-phosphate dehydrogenase Mycobacterium leprae (strain TN)
P74257 4.36e-59 207 35 14 499 3 glpD Glycerol-3-phosphate dehydrogenase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P9WN79 3.8e-57 202 34 10 430 1 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WN78 3.8e-57 202 34 10 430 3 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64185 3.8e-57 202 34 10 430 3 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q4L608 7.74e-52 187 31 16 488 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus haemolyticus (strain JCSC1435)
P18158 3.04e-50 183 31 16 482 2 glpD Aerobic glycerol-3-phosphate dehydrogenase Bacillus subtilis (strain 168)
Q49X94 2.13e-49 181 29 16 485 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q9CG65 1.1e-48 180 27 18 562 3 glpO Alpha-glycerophosphate oxidase Lactococcus lactis subsp. lactis (strain IL1403)
A7DZP8 2.39e-48 181 30 21 511 1 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Mesocricetus auratus
Q8SR40 4.12e-48 178 29 19 509 3 ECU10_0870 Probable glycerol-3-phosphate dehydrogenase Encephalitozoon cuniculi (strain GB-M1)
P43304 3.95e-47 177 30 22 513 1 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Homo sapiens
A6QLU1 4.4e-47 177 30 23 522 2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Bos taurus
Q8CPE6 4.3e-45 169 30 14 489 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPP0 4.3e-45 169 30 14 489 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q6GHD4 4.39e-45 169 29 14 474 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MRSA252)
Q9SS48 4.68e-45 170 30 25 535 1 SDP6 Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial Arabidopsis thaliana
Q7A105 6.76e-45 168 29 14 476 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MW2)
Q6G9R2 6.76e-45 168 29 14 476 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MSSA476)
Q7A5V7 6.76e-45 168 29 14 476 1 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain N315)
Q99UH2 6.76e-45 168 29 14 476 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HGD1 6.76e-45 168 29 14 476 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain COL)
Q2YXR5 6.76e-45 168 29 14 476 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2FYZ4 6.76e-45 168 29 14 476 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FHD8 6.76e-45 168 29 14 476 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain USA300)
P35596 2.76e-44 167 29 19 561 3 glpO Alpha-glycerophosphate oxidase Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q4R755 1.18e-43 167 30 22 513 2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Macaca fascicularis
Q64521 2.2e-43 166 30 22 523 1 Gpd2 Glycerol-3-phosphate dehydrogenase, mitochondrial Mus musculus
Q8NZX0 5.63e-43 164 27 17 536 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M18 (strain MGAS8232)
P35571 1.24e-42 164 30 24 526 1 Gpd2 Glycerol-3-phosphate dehydrogenase, mitochondrial Rattus norvegicus
Q99YI8 5.47e-42 161 27 18 536 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M1
P0DB21 6.6e-42 161 27 19 540 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M3 (strain SSI-1)
P0DB20 6.6e-42 161 27 19 540 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
O86963 4.67e-41 159 26 16 537 1 glpO Alpha-glycerophosphate oxidase Enterococcus casseliflavus
O14400 5.88e-41 159 27 16 531 3 gut2 Glycerol-3-phosphate dehydrogenase, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q5XAK0 1.57e-40 157 27 17 536 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P9WN81 8.9e-38 148 28 17 504 1 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WN80 8.9e-38 148 28 17 504 3 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64183 8.9e-38 148 28 17 504 3 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P90795 1.83e-36 146 28 21 516 3 gpdh-3 Probable glycerol-3-phosphate dehydrogenase, mitochondrial Caenorhabditis elegans
Q54QC1 1.13e-34 140 28 20 509 3 DDB_G0283951 Probable glycerol-3-phosphate dehydrogenase, mitochondrial Dictyostelium discoideum
P32191 1.24e-34 140 26 18 534 1 GUT2 Glycerol-3-phosphate dehydrogenase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P0A9C2 4.85e-18 90 26 15 482 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Shigella flexneri
P0A9C0 4.85e-18 90 26 15 482 1 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Escherichia coli (strain K12)
P0A9C1 4.85e-18 90 26 15 482 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Escherichia coli O157:H7
P43799 3.71e-16 84 26 18 488 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
D4GYI2 7.29e-14 77 25 13 396 1 gpdA1 Anaerobic glycerol-3-phosphate dehydrogenase subunit A1 Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
D4GQU6 2.29e-06 53 23 18 442 1 gpdA2 Anaerobic glycerol-3-phosphate dehydrogenase subunit A2 Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14395
Feature type CDS
Gene glpD
Product glycerol-3-phosphate dehydrogenase
Location 106995 - 108482 (strand: -1)
Length 1488 (nucleotides) / 495 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1619
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01266 FAD dependent oxidoreductase
PF16901 C-terminal domain of alpha-glycerophosphate oxidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0578 Energy production and conversion (C) C Glycerol-3-phosphate dehydrogenase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Glycerophospholipid metabolism
Biosynthesis of secondary metabolites		 -

Protein Sequence

METKDLIVIGGGINGAGIAADAAGRGLSVLMLEARDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHQPHLRPAWMIRAGLFLYDHLGKRTTLPGSRGLTFNSASPLKPEFKKGFEYSDCWVDDARLVVLNAQEIVRKGGEVRTRTKVTRAWRENGLWQVEAENTLTGEKLHWQAKGLVNAAGPWVKALFDDGLHLKSPYGIRLIKGSHIVVPRAHDEPQAYILQNEDHRIVFVIPWMDEFSIIGTTDVEYHGDPADVKIDDTEINYLLDVYNDHFKKTLSRDDVRWSYSGVRPLCDDESDSPQAITRDYTLDLHDENGQAPLLSVFGGKLTTYRKLGEHALDKLAAYYPQAGKAWTKQAVLTGGELNGHSRDEYARVLSETYPWLPNGLALRFARTYGSQTAKILDGAQSLSDLGQLFGHNLYEAELRYLVKNEWVVSAEDALWRRTKLGMWLSVDEQQQVAQWLESNQL

Flanking regions ( +/- flanking 50bp)

TGAGCGATAACGAACATAAAAGAATGAATGCGCGCATCAAGGGAGTCAGGATGGAAACCAAAGATTTAATCGTCATCGGGGGCGGAATAAACGGAGCAGGTATTGCTGCTGATGCCGCAGGGCGCGGGCTTTCTGTGCTTATGCTGGAAGCGCGGGATCTGGCCTGTGCCACCTCATCCGCCAGCTCAAAACTGATCCACGGCGGGCTGCGCTATCTCGAACATTATGAATTTCGTTTAGTAAGTGAAGCACTGGCTGAGCGCGAAGTTCTGTTAAAAATGGCACCGCACATTGCATTCCCGATGCGCTTTCGCCTGCCGCATCAGCCACATCTGCGCCCGGCCTGGATGATCCGCGCAGGATTATTCCTTTACGACCACCTGGGTAAACGCACAACTCTGCCCGGCAGTCGCGGACTGACGTTCAACAGTGCATCCCCGCTGAAACCGGAATTCAAAAAAGGCTTCGAATACTCGGATTGCTGGGTCGATGATGCACGCCTGGTGGTGCTTAACGCACAGGAAATTGTGCGCAAGGGCGGCGAAGTCCGCACCCGGACAAAAGTCACCCGTGCATGGCGCGAAAACGGGCTCTGGCAGGTAGAAGCTGAAAATACACTGACCGGTGAAAAATTGCACTGGCAGGCAAAAGGATTAGTTAATGCCGCCGGTCCGTGGGTGAAAGCGCTCTTTGATGACGGGCTGCACCTGAAATCACCTTACGGCATCCGTCTCATCAAAGGCAGCCATATTGTCGTTCCGCGCGCTCATGACGAGCCGCAGGCCTATATTCTGCAAAATGAAGATCACCGCATCGTGTTTGTGATCCCCTGGATGGATGAGTTTTCAATTATCGGCACGACCGATGTGGAATACCATGGCGATCCTGCTGATGTAAAAATTGATGATACAGAAATTAATTATTTGCTGGATGTTTATAACGACCACTTTAAGAAGACCCTGAGCCGCGATGATGTGCGCTGGAGCTATTCCGGTGTGCGCCCGCTGTGTGACGATGAATCCGATTCTCCGCAGGCGATTACCCGGGATTACACCCTGGATCTGCATGACGAAAACGGGCAGGCACCTCTGCTGTCCGTGTTTGGCGGGAAACTTACCACATACCGCAAACTGGGTGAACATGCGCTGGATAAACTTGCCGCCTATTATCCGCAGGCCGGAAAAGCATGGACAAAGCAGGCAGTTCTGACCGGCGGTGAACTCAATGGTCATTCACGGGATGAATATGCACGGGTACTGAGTGAAACCTATCCCTGGCTACCTAACGGGCTGGCGCTGCGCTTTGCCCGCACATACGGCAGTCAGACGGCAAAAATTCTTGATGGCGCGCAGTCACTGAGCGACCTCGGGCAGCTATTTGGTCACAATCTGTATGAAGCCGAGTTACGCTATCTGGTAAAAAATGAGTGGGTAGTCAGTGCAGAAGATGCACTGTGGCGCAGAACCAAGCTGGGAATGTGGCTCAGTGTTGATGAGCAGCAGCAGGTTGCACAGTGGCTGGAAAGCAATCAGCTTTAAAAAAAGCAGCGTTAAAAGCAATCCGTACTGTTCGGAATAACGCAGACCGG