Homologs in group_1619

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10680 FBDBKF_10680 78.4 Morganella morganii S1 glpD glycerol-3-phosphate dehydrogenase
EHELCC_15015 EHELCC_15015 78.4 Morganella morganii S2 glpD glycerol-3-phosphate dehydrogenase
NLDBIP_14845 NLDBIP_14845 78.4 Morganella morganii S4 glpD glycerol-3-phosphate dehydrogenase
LHKJJB_14500 LHKJJB_14500 78.4 Morganella morganii S3 glpD glycerol-3-phosphate dehydrogenase
HKOGLL_13120 HKOGLL_13120 78.4 Morganella morganii S5 glpD glycerol-3-phosphate dehydrogenase
F4V73_RS14395 F4V73_RS14395 78.4 Morganella psychrotolerans glpD glycerol-3-phosphate dehydrogenase

Distribution of the homologs in the orthogroup group_1619

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1619

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13035 0.0 747 76 1 490 1 glpD Aerobic glycerol-3-phosphate dehydrogenase Escherichia coli (strain K12)
P52111 0.0 557 58 2 474 3 glpD Glycerol-3-phosphate dehydrogenase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O83004 0.0 554 59 3 473 3 glpD Glycerol-3-phosphate dehydrogenase Pseudomonas tolaasii
Q2YIQ2 1.17e-174 503 48 2 493 1 eryB D-erythritol 1-phosphate dehydrogenase Brucella abortus (strain 2308)
P53435 4.68e-62 216 34 11 477 3 glpD Glycerol-3-phosphate dehydrogenase Mycobacterium leprae (strain TN)
P9WN79 1.67e-58 206 36 9 397 1 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WN78 1.67e-58 206 36 9 397 3 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64185 1.67e-58 206 36 9 397 3 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P74257 2.81e-56 199 34 14 499 3 glpD Glycerol-3-phosphate dehydrogenase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q49X94 6.59e-49 179 31 16 483 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q4L608 1.78e-47 176 31 15 483 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus haemolyticus (strain JCSC1435)
P18158 5.8e-47 174 31 13 473 2 glpD Aerobic glycerol-3-phosphate dehydrogenase Bacillus subtilis (strain 168)
Q8SR40 1.17e-45 171 29 18 514 3 ECU10_0870 Probable glycerol-3-phosphate dehydrogenase Encephalitozoon cuniculi (strain GB-M1)
Q9CG65 1.57e-45 171 27 18 566 3 glpO Alpha-glycerophosphate oxidase Lactococcus lactis subsp. lactis (strain IL1403)
Q9SS48 3.24e-45 171 29 25 552 1 SDP6 Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial Arabidopsis thaliana
Q7A105 4.56e-45 169 29 14 482 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MW2)
Q6G9R2 4.56e-45 169 29 14 482 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MSSA476)
Q7A5V7 4.56e-45 169 29 14 482 1 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain N315)
Q99UH2 4.56e-45 169 29 14 482 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HGD1 4.56e-45 169 29 14 482 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain COL)
Q2FYZ4 4.56e-45 169 29 14 482 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FHD8 4.56e-45 169 29 14 482 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain USA300)
Q2YXR5 4.85e-45 169 29 14 482 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q6GHD4 7.32e-45 168 29 14 482 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MRSA252)
O14400 3e-44 168 27 14 518 3 gut2 Glycerol-3-phosphate dehydrogenase, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q8CPE6 4.69e-44 166 30 13 491 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPP0 4.69e-44 166 30 13 491 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
A7DZP8 2.95e-43 166 29 21 517 1 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Mesocricetus auratus
O86963 4.82e-43 164 26 15 543 1 glpO Alpha-glycerophosphate oxidase Enterococcus casseliflavus
A6QLU1 4.22e-42 163 30 23 512 2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Bos taurus
P43304 1.88e-41 161 29 24 516 1 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Homo sapiens
P0DB21 2.75e-41 159 27 19 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M3 (strain SSI-1)
P0DB20 2.75e-41 159 27 19 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
Q8NZX0 4.11e-41 159 27 19 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M18 (strain MGAS8232)
P35596 2.81e-40 156 28 19 572 3 glpO Alpha-glycerophosphate oxidase Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q99YI8 4.92e-40 155 27 19 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M1
P9WN81 6.3e-40 154 28 15 495 1 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WN80 6.3e-40 154 28 15 495 3 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64183 6.3e-40 154 28 15 495 3 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q5XAK0 1.22e-39 154 26 19 553 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P32191 2.04e-39 154 27 18 535 1 GUT2 Glycerol-3-phosphate dehydrogenase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P35571 6.66e-39 154 29 22 524 1 Gpd2 Glycerol-3-phosphate dehydrogenase, mitochondrial Rattus norvegicus
Q64521 9.22e-39 153 30 22 513 1 Gpd2 Glycerol-3-phosphate dehydrogenase, mitochondrial Mus musculus
Q4R755 1.76e-38 152 29 23 512 2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Macaca fascicularis
P90795 5.39e-38 151 29 21 513 3 gpdh-3 Probable glycerol-3-phosphate dehydrogenase, mitochondrial Caenorhabditis elegans
Q54QC1 3.15e-32 134 28 21 512 3 DDB_G0283951 Probable glycerol-3-phosphate dehydrogenase, mitochondrial Dictyostelium discoideum
P0A9C2 1.87e-19 94 29 13 393 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Shigella flexneri
P0A9C0 1.87e-19 94 29 13 393 1 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Escherichia coli (strain K12)
P0A9C1 1.87e-19 94 29 13 393 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Escherichia coli O157:H7
P43799 4.03e-16 84 24 17 482 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
D4GYI2 6.71e-16 84 25 13 394 1 gpdA1 Anaerobic glycerol-3-phosphate dehydrogenase subunit A1 Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
D4GQU6 3.91e-07 56 24 16 405 1 gpdA2 Anaerobic glycerol-3-phosphate dehydrogenase subunit A2 Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14485
Feature type CDS
Gene glpD
Product glycerol-3-phosphate dehydrogenase
Location 3211685 - 3213178 (strand: 1)
Length 1494 (nucleotides) / 497 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1619
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01266 FAD dependent oxidoreductase
PF16901 C-terminal domain of alpha-glycerophosphate oxidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0578 Energy production and conversion (C) C Glycerol-3-phosphate dehydrogenase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Glycerophospholipid metabolism
Biosynthesis of secondary metabolites		 -

Protein Sequence

METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLASATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLRLAPHIAFPMRFRLPHQPHLRPAWMIRIGLFLYDHLGKRVSLPGSKSIKFGANSVLKPELTRGFEYSDCWVDDARLVVLNAQEIVRRGGEVRTRTKVTRAWRENDLWMVEAQDLRTGETSRYQAKALVNAAGPWVKTLFDEGLKLKSPYGIRLIKGSHIVIPRAHDEPQAYILQNEDNRIVFVIPWMDEFSIIGTTDVEYKGDPKDVAIDNNEVEYLLKVYNDHFKKQLTKDDIVWNYSGVRPLCDDESDSPQAITRDYTLDVHDDNGKTPLLSVFGGKLTTYRKLGEHAVDKLNAYFPNMGQAWTKEGQLPGGNLEGYDRDGYSRLIRQRHPWLPEALALRFARTYGSNTEVLLEGITDLAGMGENFGHNLYEAELRYLVKHEWVIELDDAIWRRTKLGMWLNDEQKQRITQWLEANTHTA

Flanking regions ( +/- flanking 50bp)

AGCGAAAACGAACATTAAAGAATTGTTTCGCGCATTCTTAGGAGGATGTTATGGAAACTAAAGACTTGATTGTCATCGGCGGCGGAATAAACGGCGCTGGAATTGCGGCGGATGCAGCAGGCCGAGGCCTTTCAGTATTAATGCTGGAAGCTCAAGACTTAGCCAGTGCAACATCTTCCGCTAGCTCAAAATTAATTCATGGTGGCTTACGCTATTTAGAGCATTACGAATTCCGTTTAGTCAGTGAAGCATTGGCTGAACGTGAAGTTTTATTGCGTTTGGCGCCTCATATCGCATTTCCGATGCGTTTCCGTTTACCGCATCAACCCCATCTACGCCCAGCATGGATGATCCGCATTGGTTTATTCCTCTATGATCACCTAGGCAAACGTGTCAGTTTACCGGGCAGTAAAAGTATTAAATTCGGGGCTAACTCTGTCTTAAAACCTGAATTAACTCGTGGTTTTGAATATTCCGACTGTTGGGTAGATGATGCTCGTTTAGTAGTATTAAATGCGCAAGAGATCGTTCGTCGTGGCGGTGAAGTTCGTACTCGTACCAAAGTGACGCGCGCTTGGCGTGAAAACGATTTATGGATGGTGGAAGCACAAGATTTACGCACCGGAGAAACTTCTCGCTACCAAGCAAAAGCATTAGTGAATGCAGCCGGTCCTTGGGTTAAAACATTATTCGATGAAGGGTTAAAATTAAAATCACCTTATGGTATTCGCTTAATCAAAGGTAGCCATATTGTGATCCCACGTGCTCACGATGAACCCCAAGCCTATATCTTACAAAATGAAGATAATCGCATTGTATTCGTGATCCCTTGGATGGATGAGTTCTCTATTATTGGTACCACTGATGTTGAATACAAAGGTGATCCAAAAGATGTGGCTATTGATAACAATGAAGTTGAGTACTTATTAAAAGTCTATAACGACCACTTTAAGAAACAACTGACCAAAGACGATATCGTCTGGAATTATTCAGGGGTGCGTCCATTGTGTGATGACGAATCCGATTCGCCACAAGCTATCACTCGTGACTATACCTTAGATGTACATGATGATAATGGTAAAACACCACTACTCTCTGTGTTTGGTGGTAAATTAACGACTTATCGTAAACTCGGTGAACACGCGGTTGATAAGCTAAATGCTTATTTCCCTAATATGGGTCAAGCGTGGACAAAAGAGGGTCAATTACCGGGGGGGAACTTAGAAGGTTACGATCGTGATGGCTATTCACGTCTTATTCGCCAACGTCATCCTTGGTTACCAGAAGCATTAGCACTACGTTTTGCTCGCACTTATGGTAGCAATACTGAAGTGTTGCTAGAAGGAATTACTGATTTAGCCGGAATGGGCGAAAATTTCGGTCATAATCTTTACGAAGCTGAATTACGTTATTTAGTTAAACATGAGTGGGTGATTGAGCTTGATGATGCTATTTGGCGTCGTACCAAACTTGGTATGTGGCTTAATGATGAACAAAAACAACGTATTACGCAATGGTTAGAGGCAAATACGCACACAGCATAATGCAGTAAAATATTCTCTGACTCTGTTCAATGTTCTTATTAGCAATTTTT