Homologs in group_2832

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10465 FBDBKF_10465 82.3 Morganella morganii S1 dmsD Tat proofreading chaperone DmsD
EHELCC_14800 EHELCC_14800 82.3 Morganella morganii S2 dmsD Tat proofreading chaperone DmsD
NLDBIP_14630 NLDBIP_14630 82.3 Morganella morganii S4 dmsD Tat proofreading chaperone DmsD
LHKJJB_14715 LHKJJB_14715 82.3 Morganella morganii S3 dmsD Tat proofreading chaperone DmsD
HKOGLL_13335 HKOGLL_13335 82.3 Morganella morganii S5 dmsD Tat proofreading chaperone DmsD

Distribution of the homologs in the orthogroup group_2832

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2832

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69855 5.04e-56 179 47 4 205 3 dmsD Tat proofreading chaperone DmsD Shigella flexneri
P69853 5.04e-56 179 47 4 205 1 dmsD Tat proofreading chaperone DmsD Escherichia coli (strain K12)
P69854 5.04e-56 179 47 4 205 3 dmsD Tat proofreading chaperone DmsD Escherichia coli O157:H7
Q8CW16 1.56e-55 178 47 4 205 3 dmsD Tat proofreading chaperone DmsD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8ZPK0 4.67e-51 166 49 5 200 1 dmsD Tat proofreading chaperone DmsD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z6Y5 8.21e-51 166 49 5 200 3 dmsD Tat proofreading chaperone DmsD Salmonella typhi
Q5PHH8 2.14e-50 165 49 5 200 3 dmsD Tat proofreading chaperone DmsD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P44102 2.06e-44 149 38 3 190 3 dmsD Probable Tat proofreading chaperone DmsD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P75915 2.28e-13 68 27 10 195 1 ycdY Chaperone protein YcdY Escherichia coli (strain K12)
Q9HR71 1.17e-09 58 27 2 120 2 dmsD Putative dimethyl sulfoxide reductase chaperone Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
A8H7X2 1.8e-06 50 27 2 118 3 torD Chaperone protein TorD Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
A0KU20 1.06e-05 47 29 5 121 3 torD Chaperone protein TorD Shewanella sp. (strain ANA-3)
B5FEZ9 1.78e-05 47 27 6 145 3 torD Chaperone protein TorD Aliivibrio fischeri (strain MJ11)
Q5E4I0 3.22e-05 46 26 5 145 3 torD Chaperone protein TorD Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q0HLD7 6.98e-05 45 29 5 121 3 torD Chaperone protein TorD Shewanella sp. (strain MR-4)
A5WBY3 0.000178 44 24 4 153 3 torD Chaperone protein TorD Psychrobacter sp. (strain PRwf-1)
Q8EHJ0 0.000179 44 29 7 136 3 torD Chaperone protein TorD Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q0HXP1 0.000344 43 28 5 121 3 torD Chaperone protein TorD Shewanella sp. (strain MR-7)
Q8DAQ4 0.000354 43 28 2 95 3 torD Chaperone protein TorD Vibrio vulnificus (strain CMCP6)
Q7MJ58 0.000512 43 32 0 58 3 torD Chaperone protein TorD Vibrio vulnificus (strain YJ016)
C6AN26 0.000573 42 28 3 107 3 torD Chaperone protein TorD Aggregatibacter aphrophilus (strain NJ8700)
A9KZ67 0.000736 42 25 5 135 3 torD Chaperone protein TorD Shewanella baltica (strain OS195)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14165
Feature type CDS
Gene dmsD
Product Tat proofreading chaperone DmsD
Location 48207 - 48818 (strand: 1)
Length 612 (nucleotides) / 203 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2832
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02613 Nitrate reductase delta subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3381 Posttranslational modification, protein turnover, chaperones (O) O Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23349 putative dimethyl sulfoxide reductase chaperone - -

Protein Sequence

MSQQAVSDIALTARILGAAFYYPPEETGQITALLSSGDWVAEWPYGTDAQKQAAAEKLHAVTAGDETHAQAYQRLFIGPQALPASPWGSVWLDKEQVLFGESTVALRQWMRDHNVDIALTQNEPEDHIGLLLMMVAWTAENNPDAVNALLAEHLLPWARYYLAKMQETCASPYYEGLSALTALTLNAWQETRLIIPAEKTIFA

Flanking regions ( +/- flanking 50bp)

AAACCGTGGCAGGATACGCCAATCGTTCTATTCTGATAACAGAGTGTGTTATGAGTCAGCAAGCAGTCAGTGATATCGCATTAACCGCCCGTATTCTCGGCGCGGCATTTTATTATCCGCCGGAAGAAACCGGGCAGATAACGGCGCTGCTTTCCTCCGGTGACTGGGTGGCGGAATGGCCGTACGGCACTGATGCACAAAAGCAGGCGGCGGCAGAAAAACTGCATGCCGTAACCGCAGGTGATGAAACGCATGCGCAGGCTTATCAGCGTTTATTTATTGGTCCGCAGGCATTACCGGCATCACCCTGGGGCTCTGTCTGGCTGGATAAAGAACAGGTATTGTTTGGTGAATCGACCGTGGCACTCCGTCAGTGGATGCGCGATCACAATGTGGATATTGCTCTGACGCAGAACGAGCCGGAAGATCACATAGGTTTGTTACTGATGATGGTGGCGTGGACGGCGGAAAATAATCCGGATGCCGTAAACGCACTTCTGGCAGAGCACCTTCTGCCCTGGGCGCGTTACTATCTGGCAAAAATGCAGGAAACCTGCGCAAGTCCGTACTATGAGGGGTTATCTGCCCTGACTGCGCTGACACTGAATGCCTGGCAGGAAACCCGCCTGATAATACCGGCAGAAAAAACGATTTTTGCCTGAATAAATTACCGTACGTATAAAAAAACCCTTCTGATGCGAATCCGAAGGGT