Homologs in group_2854

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10465 FBDBKF_10465 100.0 Morganella morganii S1 dmsD Tat proofreading chaperone DmsD
EHELCC_14800 EHELCC_14800 100.0 Morganella morganii S2 dmsD Tat proofreading chaperone DmsD
LHKJJB_14715 LHKJJB_14715 100.0 Morganella morganii S3 dmsD Tat proofreading chaperone DmsD
HKOGLL_13335 HKOGLL_13335 100.0 Morganella morganii S5 dmsD Tat proofreading chaperone DmsD
F4V73_RS14165 F4V73_RS14165 82.3 Morganella psychrotolerans dmsD Tat proofreading chaperone DmsD

Distribution of the homologs in the orthogroup group_2854

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2854

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69855 1.25e-54 176 48 3 198 3 dmsD Tat proofreading chaperone DmsD Shigella flexneri
P69853 1.25e-54 176 48 3 198 1 dmsD Tat proofreading chaperone DmsD Escherichia coli (strain K12)
P69854 1.25e-54 176 48 3 198 3 dmsD Tat proofreading chaperone DmsD Escherichia coli O157:H7
Q8CW16 3.97e-54 174 47 3 198 3 dmsD Tat proofreading chaperone DmsD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Z6Y5 7.35e-52 168 49 3 199 3 dmsD Tat proofreading chaperone DmsD Salmonella typhi
Q8ZPK0 8.84e-52 168 49 3 199 1 dmsD Tat proofreading chaperone DmsD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PHH8 2.96e-51 167 48 3 199 3 dmsD Tat proofreading chaperone DmsD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P44102 3.43e-48 159 39 3 200 3 dmsD Probable Tat proofreading chaperone DmsD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P75915 4.05e-14 70 26 7 183 1 ycdY Chaperone protein YcdY Escherichia coli (strain K12)
Q9HR71 1.21e-11 64 30 3 149 2 dmsD Putative dimethyl sulfoxide reductase chaperone Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P44248 5.27e-09 57 26 9 210 3 HI_1543 Uncharacterized protein HI_1543 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A8H7X2 5.06e-06 48 27 2 122 3 torD Chaperone protein TorD Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
A0KU20 5.97e-06 48 30 5 140 3 torD Chaperone protein TorD Shewanella sp. (strain ANA-3)
Q0HXP1 2.06e-05 47 30 5 140 3 torD Chaperone protein TorD Shewanella sp. (strain MR-7)
Q5E4I0 5.15e-05 45 26 5 163 3 torD Chaperone protein TorD Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q0HLD7 5.76e-05 45 30 5 140 3 torD Chaperone protein TorD Shewanella sp. (strain MR-4)
B5FEZ9 0.000104 45 26 6 163 3 torD Chaperone protein TorD Aliivibrio fischeri (strain MJ11)
A5WBY3 0.000226 44 27 4 112 3 torD Chaperone protein TorD Psychrobacter sp. (strain PRwf-1)
Q8DAQ4 0.000596 42 30 0 65 3 torD Chaperone protein TorD Vibrio vulnificus (strain CMCP6)
Q7MJ58 0.000607 42 30 0 65 3 torD Chaperone protein TorD Vibrio vulnificus (strain YJ016)
A9KZ67 0.000626 42 28 5 139 3 torD Chaperone protein TorD Shewanella baltica (strain OS195)
E1SVR5 0.001 42 26 4 134 3 torD Chaperone protein TorD Ferrimonas balearica (strain DSM 9799 / CCM 4581 / KCTC 23876 / PAT)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_14630
Feature type CDS
Gene dmsD
Product Tat proofreading chaperone DmsD
Location 49894 - 50505 (strand: 1)
Length 612 (nucleotides) / 203 (amino acids)
In genomic island -

Contig

Accession ZDB_530
Length 141725 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2854
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF02613 Nitrate reductase delta subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3381 Posttranslational modification, protein turnover, chaperones (O) O Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23349 putative dimethyl sulfoxide reductase chaperone - -

Protein Sequence

MSEQAVSDVALTARILGAAFYYPPSEIVQITELLSSGEWVAEWPYGDDAQKQAAAQKLGLAVTGEETLAQAYQRLFIGPQALPASPWGSVWLDKEQVLFGDSTVALREWMRVHQVDIALSQNEPEDHIGLLLMMAAWTAENRPDALNSLLAEHLLPWARFYLARMQEKCGSPFYEGLSALTALTLRGWQDALLVIPAEKTIFA

Flanking regions ( +/- flanking 50bp)

CGGAAACCGTGGCAGGATACGCGGATATTTTATTGTGAGAATCCTGAGTTATGAGTGAGCAAGCTGTCAGTGATGTTGCCTTAACGGCCCGTATTCTCGGGGCGGCATTTTACTATCCGCCGTCAGAAATAGTGCAGATAACAGAACTGCTCTCATCCGGGGAGTGGGTGGCGGAATGGCCGTACGGCGATGATGCGCAAAAGCAGGCCGCCGCACAGAAACTGGGTCTGGCTGTCACCGGTGAGGAAACCTTAGCGCAGGCCTATCAGCGGCTGTTTATCGGCCCGCAGGCACTGCCCGCATCGCCGTGGGGTTCCGTCTGGCTGGATAAAGAACAGGTGCTGTTCGGGGATTCCACTGTTGCTCTGCGTGAGTGGATGCGTGTACATCAGGTAGATATTGCGCTGTCGCAGAATGAGCCGGAAGATCACATCGGTCTGTTACTGATGATGGCGGCCTGGACGGCGGAAAATCGTCCGGATGCCCTGAATTCACTGCTGGCGGAACACCTTCTGCCGTGGGCCCGCTTTTATCTGGCGCGGATGCAGGAAAAATGCGGCAGCCCGTTCTATGAAGGGTTATCAGCGCTGACTGCCCTGACACTCAGGGGCTGGCAGGATGCACTGCTGGTGATCCCGGCAGAGAAAACCATTTTTGCCTGAGATATCATAATCAGATCAAAAAGCCCTTCCGGTCTGCACCGGAAGGGCTT