Homologs in group_3076

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18830 FBDBKF_18830 94.5 Morganella morganii S1 cobU bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
EHELCC_17025 EHELCC_17025 94.5 Morganella morganii S2 cobU bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
NLDBIP_18405 NLDBIP_18405 94.5 Morganella morganii S4 cobU bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
LHKJJB_09220 LHKJJB_09220 94.5 Morganella morganii S3 cobU bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
HKOGLL_08770 HKOGLL_08770 94.5 Morganella morganii S5 cobU bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase

Distribution of the homologs in the orthogroup group_3076

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3076

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AE76 1.13e-67 207 55 1 181 2 cobU Bifunctional adenosylcobalamin biosynthesis protein CobU Escherichia coli (strain K12)
P0AE77 1.13e-67 207 55 1 181 3 cobU Bifunctional adenosylcobalamin biosynthesis protein CobU Escherichia coli O157:H7
Q05599 1.77e-65 201 55 1 181 1 cobU Bifunctional adenosylcobalamin biosynthesis protein CobU Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P29931 4.11e-29 108 31 1 180 1 cobP Bifunctional adenosylcobalamin biosynthesis protein CobP Sinorhizobium sp.
Q9I466 1.25e-26 102 35 2 179 3 cobP Bifunctional adenosylcobalamin biosynthesis protein CobP Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13765
Feature type CDS
Gene cobU
Product bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
Location 386800 - 387345 (strand: 1)
Length 546 (nucleotides) / 181 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3076
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2087 Coenzyme transport and metabolism (H) H Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] Porphyrin metabolism
Metabolic pathways
Biosynthesis of cofactors		 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin

Protein Sequence

MIIITGGARSGKSSFAENLVAERCHSALYIATSVITDDEMAARVARHKADRPQHWRTWEGFKNIADAIRYERKPGEGIMLECITTLIANLLYDASGGADPDTLDYAKLEIGINSEIDHIIDACKESGCPVYIVTNELGMSITPENRLARHFVDIAGRINQKLARQAEQVWLVVSGIGVQIK

Flanking regions ( +/- flanking 50bp)

GATATCGCAGAAATCACCCGTCTGATGCGCGCGCACAAGGAAAAAACAGCATGATTATTATCACCGGCGGCGCCCGCAGCGGCAAAAGCAGCTTTGCCGAAAATCTTGTCGCGGAGAGGTGTCACAGCGCACTGTATATCGCCACCTCTGTCATTACTGACGATGAAATGGCGGCGCGTGTCGCCCGCCATAAAGCTGACCGTCCGCAGCACTGGCGCACTTGGGAAGGGTTTAAAAACATTGCAGATGCCATCCGTTATGAGCGCAAACCCGGTGAAGGGATTATGCTGGAATGCATCACCACGCTTATCGCCAACCTGCTTTATGATGCCTCAGGGGGCGCTGATCCCGATACCCTGGATTATGCAAAACTGGAAATTGGCATCAACAGCGAAATCGACCATATCATCGATGCCTGCAAAGAGAGCGGATGCCCGGTGTATATCGTCACTAATGAGCTGGGCATGAGCATCACGCCGGAAAACCGCCTGGCGCGCCACTTTGTGGATATCGCCGGGCGTATTAATCAAAAGCTTGCCCGTCAGGCAGAACAGGTCTGGCTGGTTGTTTCCGGGATCGGAGTTCAAATCAAATGAACCTGAAATATCTGTGGGCGACACTGCAATTTATCACCCGGATACCGGTG