Homologs in group_2727

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07465 FBDBKF_07465 93.2 Morganella morganii S1 glmS methylaspartate mutase subunit S
EHELCC_17135 EHELCC_17135 93.2 Morganella morganii S2 glmS methylaspartate mutase subunit S
NLDBIP_13740 NLDBIP_13740 93.2 Morganella morganii S4 glmS methylaspartate mutase subunit S
LHKJJB_09110 LHKJJB_09110 93.2 Morganella morganii S3 glmS methylaspartate mutase subunit S
HKOGLL_08660 HKOGLL_08660 93.2 Morganella morganii S5 glmS methylaspartate mutase subunit S

Distribution of the homologs in the orthogroup group_2727

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2727

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A1JSN5 3.66e-82 241 78 1 147 3 glmS Glutamate mutase sigma subunit Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q32IJ3 1.15e-71 214 75 0 136 3 glmS Glutamate mutase sigma subunit Shigella dysenteriae serotype 1 (strain Sd197)
P58620 1.15e-71 214 75 0 136 3 glmS Glutamate mutase sigma subunit Escherichia coli O157:H7
Q24SG7 5.44e-56 174 59 0 135 3 glmS Glutamate mutase sigma subunit Desulfitobacterium hafniense (strain Y51)
Q3AFA7 5.29e-50 159 54 0 134 3 glmS Glutamate mutase sigma subunit Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)
Q890S0 3.83e-49 157 54 0 134 3 glmS Glutamate mutase sigma subunit Clostridium tetani (strain Massachusetts / E88)
P80078 1.04e-48 156 54 0 134 1 glmS Glutamate mutase sigma subunit Clostridium cochlearium
Q05488 2.93e-48 155 54 0 132 1 glmS Glutamate mutase sigma subunit Clostridium tetanomorphum
P61191 2.61e-43 142 54 0 119 3 glmS Glutamate mutase sigma subunit Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104)
Q8RHY7 8.11e-41 136 45 0 135 3 glmS Glutamate mutase sigma subunit Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Q5V3F0 5.96e-38 129 47 1 130 3 glmS2 Glutamate mutase sigma subunit 2 Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
Q5V467 3.18e-34 119 40 1 139 3 glmS1 Glutamate mutase sigma subunit 1 Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
Q9HN21 2.74e-27 102 39 1 133 3 glmS Glutamate mutase sigma subunit Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
A6H5Y3 1.51e-05 47 30 1 106 1 Mtr Methionine synthase Mus musculus
Q9Z2Q4 6.14e-05 45 29 1 106 1 Mtr Methionine synthase Rattus norvegicus
Q4JIJ3 6.26e-05 45 29 1 106 2 MTR Methionine synthase Bos taurus
Q99707 6.7e-05 45 29 1 106 1 MTR Methionine synthase Homo sapiens
Q5KUG0 0.000166 43 35 4 107 1 icmF Fused isobutyryl-CoA mutase Geobacillus kaustophilus (strain HTA426)
Q57195 0.000207 43 33 1 81 3 HI_1042 Uncharacterized protein HI_1042 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P9WJK5 0.000333 43 27 2 120 1 mutB Probable methylmalonyl-CoA mutase large subunit Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WJK4 0.000333 43 27 2 120 3 mutB Probable methylmalonyl-CoA mutase large subunit Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65488 0.000333 43 27 2 120 3 mutB Probable methylmalonyl-CoA mutase large subunit Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P58982 0.000406 42 29 1 92 3 mttC1 Trimethylamine corrinoid protein 1 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q09582 0.00053 42 37 0 59 3 metr-1 Probable methionine synthase Caenorhabditis elegans
Q59268 0.000681 42 29 2 125 1 mgm 2-methyleneglutarate mutase Eubacterium barkeri
A8XY95 0.001 41 37 0 59 3 metr-1 Probable methionine synthase Caenorhabditis briggsae

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13650
Feature type CDS
Gene glmS
Product methylaspartate mutase subunit S
Location 366061 - 366504 (strand: -1)
Length 444 (nucleotides) / 147 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2727
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02310 B12 binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2185 Lipid transport and metabolism (I) I Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)

Kegg Ortholog Annotation(s)

Protein Sequence

MQNPTIVIGVIGADCHAVGNKVLDRVFAQHNFNVINLGVMVSQDEYIDAAIETGAQAIVVSSIYGHGEVDCLGMRDRCIERGLGEILLYVGGNLVIGKQAPAEIDKKFSAMGFNRVFFPNTDLEFVCDVMKKDIEKSLSAKKEGMTA

Flanking regions ( +/- flanking 50bp)

AAATTGTATTGACTTTAATTCCGAACATTTAGTCTATTTAGAGGTATATCATGCAGAATCCTACCATTGTTATTGGTGTAATTGGTGCCGATTGCCATGCCGTCGGTAACAAAGTTTTAGATCGCGTTTTCGCGCAACACAATTTCAACGTGATCAATCTTGGTGTCATGGTAAGCCAGGACGAATATATTGATGCCGCCATTGAAACCGGTGCGCAGGCAATTGTTGTTTCTTCTATTTACGGACACGGTGAAGTTGACTGTTTAGGGATGCGCGACCGTTGCATCGAACGTGGTCTGGGCGAAATTCTGCTGTATGTCGGCGGTAACCTGGTTATCGGTAAACAGGCACCGGCTGAAATCGATAAAAAATTCTCCGCAATGGGCTTTAACCGTGTGTTCTTCCCGAATACTGACCTGGAATTTGTCTGCGATGTCATGAAGAAAGATATCGAGAAAAGCCTGTCAGCTAAAAAAGAAGGAATGACCGCGTAATGATCTCTGTCTCTATAGATATCGGTTCTACCTGGACGAAAGGTGCCGTG