Homologs in group_28

Help

13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02805 FBDBKF_02805 29.6 Morganella morganii S1 phzF putative epimerase YddE/YHI9, PhzF superfamily
FBDBKF_02810 FBDBKF_02810 28.6 Morganella morganii S1 phzF putative epimerase YddE/YHI9, PhzF superfamily
EHELCC_03275 EHELCC_03275 29.6 Morganella morganii S2 phzF putative epimerase YddE/YHI9, PhzF superfamily
EHELCC_03280 EHELCC_03280 28.6 Morganella morganii S2 phzF putative epimerase YddE/YHI9, PhzF superfamily
NLDBIP_00180 NLDBIP_00180 28.6 Morganella morganii S4 phzF putative epimerase YddE/YHI9, PhzF superfamily
NLDBIP_00185 NLDBIP_00185 29.6 Morganella morganii S4 phzF putative epimerase YddE/YHI9, PhzF superfamily
LHKJJB_01850 LHKJJB_01850 29.6 Morganella morganii S3 phzF putative epimerase YddE/YHI9, PhzF superfamily
LHKJJB_01855 LHKJJB_01855 28.6 Morganella morganii S3 phzF putative epimerase YddE/YHI9, PhzF superfamily
HKOGLL_01890 HKOGLL_01890 29.6 Morganella morganii S5 phzF putative epimerase YddE/YHI9, PhzF superfamily
HKOGLL_01895 HKOGLL_01895 28.6 Morganella morganii S5 phzF putative epimerase YddE/YHI9, PhzF superfamily
F4V73_RS05255 F4V73_RS05255 29.7 Morganella psychrotolerans - PhzF family phenazine biosynthesis protein
PMI_RS08270 PMI_RS08270 27.2 Proteus mirabilis HI4320 - PhzF family phenazine biosynthesis protein
PMI_RS10595 PMI_RS10595 34.1 Proteus mirabilis HI4320 - PhzF family phenazine biosynthesis protein

Distribution of the homologs in the orthogroup group_28

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_28

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P40788 1.62e-155 439 70 0 291 3 yddE Uncharacterized isomerase YddE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37757 2.45e-154 436 69 0 291 1 yddE Uncharacterized isomerase YddE Escherichia coli (strain K12)
P58292 2.26e-152 431 68 0 291 3 yddE Uncharacterized isomerase YddE Escherichia coli O157:H7
P58293 1.29e-91 277 45 2 296 3 CA_C3446 Uncharacterized isomerase CA_C3446 Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
O31570 1.23e-43 153 36 7 286 3 yfhB Uncharacterized isomerase YfhB Bacillus subtilis (strain 168)
Q9RUQ2 1.2e-36 135 35 4 291 3 DR_1330 Uncharacterized isomerase DR_1330 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9KBH7 5.37e-33 125 33 9 290 3 BH1950 Uncharacterized isomerase BH1950 Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q8NIL3 5.75e-27 110 29 8 297 3 aes1 Antisense-enhancing sequence 1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q51520 1.04e-25 106 30 11 289 3 phzF Trans-2,3-dihydro-3-hydroxyanthranilate isomerase Pseudomonas chlororaphis
P73125 4.69e-24 102 30 10 301 3 slr1019 Uncharacterized isomerase slr1019 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q51792 9.29e-24 100 30 11 285 1 phzF Trans-2,3-dihydro-3-hydroxyanthranilate isomerase Pseudomonas fluorescens
O69754 2.93e-23 99 28 12 281 3 phzF1 Trans-2,3-dihydro-3-hydroxyanthranilate isomerase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I073 3.83e-23 99 30 12 296 3 PA2770 Uncharacterized isomerase PA2770 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HY42 8.72e-22 95 31 11 285 3 PA3578 Uncharacterized isomerase PA3578 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9A3I3 1.36e-21 95 29 11 299 3 CC_3221 Uncharacterized isomerase CC_3221 Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q9CKV2 4.21e-21 94 29 9 274 3 PM1503 Uncharacterized isomerase PM1503 Pasteurella multocida (strain Pm70)
P30039 1.23e-20 92 30 8 255 1 PBLD Phenazine biosynthesis-like domain-containing protein Homo sapiens
Q9DCG6 7.35e-19 87 28 11 305 1 Pbld1 Phenazine biosynthesis-like domain-containing protein 1 Mus musculus
Q5RDZ1 1e-18 87 27 11 317 2 PBLD Phenazine biosynthesis-like domain-containing protein Pongo abelii
Q9KG32 2.48e-18 85 28 7 239 3 BH0283 Uncharacterized isomerase BH0283 Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q9CXN7 3.9e-18 85 27 9 307 1 Pbld2 Phenazine biosynthesis-like domain-containing protein 2 Mus musculus
Q2HJF4 7.26e-17 82 29 8 251 2 PBLD Phenazine biosynthesis-like domain-containing protein Bos taurus
Q68G31 2.1e-14 75 28 7 250 2 Pbld Phenazine biosynthesis-like domain-containing protein Rattus norvegicus
P38765 2.12e-13 72 24 11 300 1 YHI9 Uncharacterized isomerase YHI9 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q98KN6 3.7e-11 66 29 11 296 3 mll1393 Uncharacterized isomerase mll1393 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
Q9KMG3 0.000227 45 24 8 248 3 VC_A0395 Uncharacterized isomerase VC_A0395 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13370
Feature type CDS
Gene -
Product PhzF family isomerase
Location 304772 - 305665 (strand: -1)
Length 894 (nucleotides) / 297 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000003
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_28
Orthogroup size 14
N. genomes 7

Actions

Genomic region

Domains

PF02567 Phenazine biosynthesis-like protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0384 General function prediction only (R) R Predicted epimerase YddE/YHI9, PhzF superfamily

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] Phenazine biosynthesis
Metabolic pathways
Biosynthesis of secondary metabolites
Quorum sensing		 Pyocyanine biosynthesis, chorismate => pyocyanine

Protein Sequence

MTPHLFHVDAFTKELFRGNSAGVVLNADELTEEQMQLIARELRHSETAFVLKSEESDIRIRYFTPSAEVPICGHATVSVHYVRAKMLGLKSCTLYQSSLAGRHRVDIDYKNDDYIITLEQGEPLFEPPLEGDIRTRIIRALGLSEDNILTGLPVQIVSTGHSKVMIPLKSDVSVDNINPDLAGLAAISGEIGCNGFFVFSIRPGICETDGRMFAPAIGIAEDPVTGNANGPMGAWIVRYGLMPHDGKTLRIRGHQGRAIGRSGTVHVTVNIKDNQPQKVSISGEAVILFDAPLPLLG

Flanking regions ( +/- flanking 50bp)

GATACTATCGGGTAAGATATCTGTTTTTCGTCGTATTACCGGAGAAAACCATGACACCACATCTTTTTCATGTTGATGCATTTACCAAAGAGTTGTTCAGAGGAAATTCAGCTGGTGTAGTGCTGAATGCTGATGAGTTAACTGAAGAACAAATGCAATTGATTGCCCGCGAACTGCGCCACTCTGAAACAGCGTTTGTTCTGAAAAGTGAAGAAAGTGATATACGTATCCGTTATTTCACACCATCAGCGGAGGTGCCGATTTGTGGTCATGCGACAGTATCGGTTCACTATGTCCGGGCAAAAATGCTGGGACTGAAAAGTTGCACACTGTATCAGTCCTCTCTGGCAGGTCGCCATCGTGTTGATATTGATTATAAAAATGATGACTACATCATCACGCTGGAGCAGGGGGAGCCTTTATTTGAGCCGCCGCTTGAAGGGGATATCCGTACCCGGATCATCCGTGCGCTTGGTTTAAGTGAAGATAATATTCTGACCGGATTGCCGGTACAGATTGTTTCCACCGGACATTCTAAAGTGATGATCCCGCTGAAATCTGATGTGTCTGTTGATAATATCAATCCTGATTTAGCCGGACTTGCAGCGATCAGCGGCGAAATTGGCTGCAACGGATTTTTTGTTTTTTCCATCCGTCCGGGCATCTGTGAAACTGACGGGCGAATGTTTGCCCCGGCGATTGGGATTGCTGAAGACCCGGTGACCGGCAATGCTAACGGACCGATGGGCGCATGGATTGTCCGCTACGGACTGATGCCGCATGATGGCAAAACATTGCGGATCCGGGGGCATCAGGGACGGGCTATCGGGCGCAGCGGGACTGTGCATGTGACTGTGAATATTAAAGACAATCAGCCGCAGAAAGTCAGTATCTCAGGGGAAGCAGTTATTTTATTTGATGCGCCATTGCCGTTGTTGGGTTGATTTGACTCATCAGCTGATATTTTGATGTATACCCTTATTCATTCAAACTG