COG0384


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0384, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted epimerase YddE/YHI9, PhzF superfamily
Function(s) descr. General function prediction only (R)

Occurence in the database

COG0384 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_42 FBDBKF_02805 257328 258185 -1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S1
1 group_42 FBDBKF_02810 258214 259056 -1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S1
2 group_42 EHELCC_03275 645148 646005 -1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S2
3 group_42 EHELCC_03280 646034 646876 -1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S2
4 group_42 NLDBIP_00180 33260 34102 1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S4
5 group_42 NLDBIP_00185 34131 34988 1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S4
6 group_42 LHKJJB_01850 357697 358554 -1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S3
7 group_42 LHKJJB_01855 358583 359425 -1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S3
8 group_42 HKOGLL_01890 363208 364065 -1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S5
9 group_42 HKOGLL_01895 364094 364936 -1 phzF putative epimerase YddE/YHI9, PhzF superfamily Morganella morganii S5
10 group_42 F4V73_RS05255 1119159 1120001 -1 PhzF family phenazine biosynthesis protein Morganella psychrotolerans
11 group_42 F4V73_RS13370 304772 305665 -1 PhzF family isomerase Morganella psychrotolerans
12 group_42 PMI_RS08270 1807896 1808675 1 PhzF family phenazine biosynthesis protein Proteus mirabilis HI4320
13 group_42 PMI_RS10595 2331162 2332049 1 PhzF family phenazine biosynthesis protein Proteus mirabilis HI4320