Homologs in group_4347

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4347

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4347

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P22595 4.16e-06 48 32 10 176 3 fimA Type-1 fimbrial protein subunit Serratia marcescens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13300
Feature type CDS
Gene -
Product fimbrial protein
Location 289527 - 290081 (strand: 1)
Length 555 (nucleotides) / 184 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000003
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4347
Orthogroup size 1
N. genomes 1

Actions

Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07345 major type 1 subunit fimbrin (pilin) Shigellosis
Pertussis		 -

Protein Sequence

MHKKLIVLSIAALFGTTAAQAANQTSVEFLGNVQAISCDINVNGQSQVSLGTVKTSDFATANSAITAGQKEFQIALTGCDTPAAAGTASLEVSGDTVSGTNNIFLQKSKNPTSNVGVMLMNGANPVENGSLVEIGKVTEGEGGALNPLTDNTVTLTAAYASTATAQNVTVGTFNAPVLFSFVYQ

Flanking regions ( +/- flanking 50bp)

TAAAAATCAACAATCCGTTTATTATTTGTATAAACAAACTGGGGTATATTATGCATAAGAAATTAATCGTTTTATCTATTGCTGCTTTATTTGGTACTACCGCTGCTCAGGCTGCAAACCAGACAAGTGTCGAGTTTTTAGGTAACGTTCAGGCAATCAGCTGTGATATTAACGTGAATGGTCAGAGCCAGGTCTCTCTGGGTACAGTAAAAACATCTGACTTTGCAACTGCCAACAGCGCTATCACTGCCGGGCAGAAAGAATTTCAGATTGCATTAACCGGCTGTGACACACCTGCTGCCGCAGGTACTGCATCACTGGAAGTGAGCGGTGATACCGTATCAGGTACCAATAATATCTTCCTGCAGAAATCTAAAAACCCAACCAGTAATGTCGGTGTAATGCTGATGAATGGTGCAAATCCTGTAGAAAACGGTTCACTCGTTGAAATTGGTAAAGTAACTGAAGGGGAAGGAGGCGCCTTAAATCCTTTAACTGATAATACCGTTACCTTAACCGCTGCGTATGCATCAACTGCAACAGCACAAAACGTGACAGTCGGTACTTTCAACGCACCTGTTCTGTTCTCATTTGTTTATCAGTAATTAATTTTCAGGGAGGATATACACATTGTCCGGATTACCCGGAAGACTGT