Homologs in group_2924

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13995 FBDBKF_13995 86.9 Morganella morganii S1 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
EHELCC_11670 EHELCC_11670 86.9 Morganella morganii S2 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
NLDBIP_12010 NLDBIP_12010 86.9 Morganella morganii S4 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
LHKJJB_11870 LHKJJB_11870 86.9 Morganella morganii S3 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
HKOGLL_10485 HKOGLL_10485 86.9 Morganella morganii S5 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily

Distribution of the homologs in the orthogroup group_2924

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2924

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q3IQ21 4.9e-05 48 24 6 219 3 gshA Glutamate--cysteine ligase Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12850
Feature type CDS
Gene -
Product glutamate-cysteine ligase family protein
Location 173826 - 174947 (strand: -1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2924
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF04107 Glutamate-cysteine ligase family 2(GCS2)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2170 Posttranslational modification, protein turnover, chaperones (O) O Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily

Protein Sequence

MQKEYRVGIEFEYWLTQYRDKRAAGIKSFDNITLSELAPALDNRPGLDDESLHKGDAGIKAGYWYVEGDERFSTTGKLTAQVIKGIEIRTPPATSVTDALTALQTIEAQLSERLRLCGLGLAISAYHPVSPRYQFIPPLNDWEKAFREEHSAFRHADLVMQTCGPDVNISVPEMSDARVVQAVEKLTFFAPYLVALSLNGPVENGQLWGGLSRRTALRSCHRPSCKGFLTNAAVYPHDFIYLARNENEHGRIEFKAFDAVPDPVLLGAFCAWILGLVLDDTISFNYGVQPDSLFNAIAREPFADLTVATVIDTLLNAAKRALEQHGLLHEAQRLTLLSVRLATKITPADEAITRFLTNGELMHFGGLWPDMKG

Flanking regions ( +/- flanking 50bp)

TTATTATTTGCACACCAACAATAAGAGAATTAACCGGGATTACATCGCTTATGCAAAAAGAGTATCGGGTCGGGATTGAATTTGAATATTGGCTGACACAGTACCGGGATAAACGTGCCGCAGGTATTAAATCCTTTGACAATATTACCTTATCAGAACTGGCACCGGCGCTGGATAACCGCCCGGGGCTGGATGATGAATCTCTGCATAAAGGCGACGCAGGTATTAAGGCCGGTTACTGGTATGTTGAAGGTGATGAGCGTTTTTCAACGACAGGAAAGCTTACCGCGCAGGTGATTAAAGGCATTGAAATCCGCACGCCGCCTGCGACCTCTGTTACTGATGCGCTGACAGCATTACAGACTATCGAGGCGCAACTGAGTGAGCGCCTGCGTCTCTGCGGGTTGGGATTGGCGATCAGCGCTTATCACCCGGTGTCACCGCGCTATCAGTTTATCCCGCCGCTCAATGACTGGGAAAAGGCATTCCGTGAAGAACATTCCGCCTTCCGTCATGCGGATTTGGTGATGCAGACCTGCGGACCGGACGTTAATATTTCTGTACCGGAAATGAGTGATGCCCGTGTTGTACAGGCGGTTGAAAAACTGACTTTTTTCGCGCCTTATCTGGTCGCGTTATCCCTGAACGGCCCGGTAGAGAACGGGCAACTGTGGGGCGGATTATCACGGCGGACGGCGCTGCGTAGTTGTCATCGCCCGTCATGCAAAGGGTTTCTGACAAACGCGGCGGTGTATCCGCATGATTTTATTTACCTTGCGCGAAATGAGAATGAGCACGGGCGGATTGAATTCAAAGCATTTGATGCCGTACCGGACCCGGTGCTGCTGGGCGCATTTTGCGCGTGGATCCTGGGGCTGGTGCTGGATGATACCATTTCGTTTAACTATGGCGTGCAGCCTGATTCCCTGTTTAACGCGATTGCCCGTGAGCCGTTTGCTGATCTGACTGTCGCGACGGTCATCGACACATTACTGAATGCAGCAAAACGGGCGCTGGAGCAGCACGGTCTGCTGCATGAAGCACAGCGCCTGACATTACTTAGTGTTCGGCTGGCAACTAAAATCACCCCGGCTGATGAGGCCATTACCCGTTTTCTTACCAACGGGGAGTTAATGCATTTCGGCGGGCTGTGGCCGGATATGAAAGGATAAGCCTGCCGTCATATCAGGATACACTTTAAAACCCATAAAAAGAGTCGTTA