Homologs in group_2939

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13995 FBDBKF_13995 100.0 Morganella morganii S1 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
EHELCC_11670 EHELCC_11670 100.0 Morganella morganii S2 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
LHKJJB_11870 LHKJJB_11870 100.0 Morganella morganii S3 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
HKOGLL_10485 HKOGLL_10485 100.0 Morganella morganii S5 ybdK Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
F4V73_RS12850 F4V73_RS12850 86.9 Morganella psychrotolerans - glutamate-cysteine ligase family protein

Distribution of the homologs in the orthogroup group_2939

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2939

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q3IQ21 7.72e-07 54 26 5 210 3 gshA Glutamate--cysteine ligase Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
Q5V3Q5 3.09e-05 49 23 5 222 3 gshA Glutamate--cysteine ligase Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
Q5LRC0 0.00012 47 26 9 224 3 SPO2209 Putative glutamate--cysteine ligase 2 Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
P9WPK7 0.000411 45 26 4 145 1 egtA Glutamate--cysteine ligase EgtA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPK6 0.000411 45 26 4 145 2 egtA Glutamate--cysteine ligase EgtA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q18H65 0.000536 45 23 5 220 3 gshA Glutamate--cysteine ligase Haloquadratum walsbyi (strain DSM 16790 / HBSQ001)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_12010
Feature type CDS
Gene ybdK
Product Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily
Location 181208 - 182329 (strand: -1)
Length 1122 (nucleotides) / 373 (amino acids)
In genomic island -

Contig

Accession ZDB_526
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2939
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF04107 Glutamate-cysteine ligase family 2(GCS2)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2170 Posttranslational modification, protein turnover, chaperones (O) O Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily

Protein Sequence

MQKEYRVGIEFEYWLTQYRNKSAAGIKSFDNITLSELAPALNNRPGMDDASLHKGDAGIKAGYWYVEGDERFSPEGKLIAQVIKGIEIRTPPAKSVTAALDSLQIIEAQLSERLKACGLGLAISAYHPVSPRYQFNPPLNAWEKAFREEHAAFRHADLVMQTCGPDINISVPEMSDARVVHAVEKLTFFAPYLVALSLNGPLENGQLWGGLSRRTALRSCHRPACKGFLTNSAVYPHDFIYPARNEGEHGRIEFKAFDAVPDPALMGAFCAWILGLVLDDTISFNYSVQPDARFNAIAREPFADLTVSTVVETLLIAARRALEQHGLLNEAARLQLLSERLANRMTPADEMITRFLVSGELMHFGGLWPEQDA

Flanking regions ( +/- flanking 50bp)

TCAGGGGCTATACCGTCGCACCAAAAGTATTAACCGGGATTACATCACGTATGCAAAAAGAGTATCGGGTCGGGATTGAATTTGAATATTGGCTGACACAGTACCGGAATAAAAGTGCCGCCGGTATTAAATCCTTTGACAATATTACCCTGTCAGAGCTGGCGCCTGCACTGAATAACCGCCCGGGGATGGATGATGCCTCGCTGCATAAGGGTGATGCGGGGATTAAAGCCGGTTACTGGTATGTTGAGGGCGATGAGCGGTTTTCACCGGAAGGCAAACTCATTGCCCAGGTTATCAAAGGGATAGAAATCCGCACGCCACCGGCAAAGTCGGTGACAGCGGCACTGGATTCCCTGCAGATTATTGAAGCGCAGCTGAGTGAACGTCTGAAAGCGTGCGGGCTGGGGCTGGCAATCAGTGCTTATCATCCGGTTTCGCCGCGCTATCAGTTTAATCCGCCGCTGAATGCATGGGAAAAAGCGTTCCGTGAGGAGCACGCCGCTTTCCGCCACGCCGATCTGGTAATGCAGACCTGCGGCCCGGATATCAATATTTCCGTGCCGGAAATGAGTGACGCCCGTGTTGTGCATGCGGTTGAAAAACTGACGTTCTTCGCACCGTATCTGGTGGCGCTTTCGCTGAACGGCCCGCTGGAAAACGGGCAGTTATGGGGCGGTTTATCCCGCCGTACCGCACTGCGCAGTTGTCACCGTCCGGCCTGTAAAGGGTTCCTGACCAACTCGGCGGTGTATCCGCATGACTTTATTTATCCGGCACGTAACGAGGGTGAGCACGGTCGGATTGAATTCAAAGCGTTCGATGCGGTTCCGGACCCGGCGCTGATGGGCGCATTCTGTGCGTGGATCCTCGGGCTGGTGCTGGATGACACCATTTCCTTTAATTACAGCGTGCAGCCGGACGCCCGCTTTAATGCGATTGCCCGCGAGCCGTTTGCCGACCTGACTGTTTCCACGGTGGTTGAGACACTGCTTATCGCCGCCCGGCGCGCGCTGGAGCAGCATGGCCTGCTGAATGAAGCGGCGCGGCTGCAGTTACTCAGCGAACGTCTGGCAAACAGAATGACCCCGGCGGATGAAATGATCACCCGTTTCCTGGTCAGCGGGGAGTTAATGCATTTCGGCGGATTGTGGCCGGAGCAGGATGCATAACGCTGTCATATCAGGATACATTTTTATTGCCGGTAACAATAAACCGTTAT