Homologs in group_2009

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15090 FBDBKF_15090 89.1 Morganella morganii S1 lysR LysR family transcriptional regulator
EHELCC_11155 EHELCC_11155 89.1 Morganella morganii S2 lysR LysR family transcriptional regulator
NLDBIP_11500 NLDBIP_11500 89.1 Morganella morganii S4 lysR LysR family transcriptional regulator
LHKJJB_11360 LHKJJB_11360 89.1 Morganella morganii S3 lysR LysR family transcriptional regulator
HKOGLL_09970 HKOGLL_09970 89.1 Morganella morganii S5 lysR LysR family transcriptional regulator
PMI_RS01655 PMI_RS01655 63.8 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_2009

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2009

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P03030 2.45e-138 396 61 1 304 3 lysR Transcriptional activator protein LysR Escherichia coli (strain K12)
Q00678 3.25e-38 140 30 1 280 3 nocR Regulatory protein NocR Agrobacterium fabrum (strain C58 / ATCC 33970)
P35112 2.13e-37 137 29 1 280 3 nocR Regulatory protein NocR Agrobacterium tumefaciens (strain T37)
P72294 7.36e-27 109 26 4 285 3 occR Octopine catabolism/uptake operon regulatory protein OccR Rhizobium meliloti
P0A4T3 2.69e-26 108 28 3 293 1 occR Octopine catabolism/uptake operon regulatory protein OccR Rhizobium radiobacter
P0A4T4 2.69e-26 108 28 3 293 1 occR Octopine catabolism/uptake operon regulatory protein OccR Agrobacterium tumefaciens (strain Ach5)
A0T0G2 4.05e-24 102 24 5 299 3 rbcR Probable RuBisCO transcriptional regulator Phaeodactylum tricornutum (strain CCAP 1055/1)
P37499 9.74e-23 98 27 5 249 3 yybE Uncharacterized HTH-type transcriptional regulator YybE Bacillus subtilis (strain 168)
P0DV33 2.49e-22 97 33 0 143 1 admX HTH-type transcriptional regulator AdmX Serratia plymuthica
P73123 3.24e-19 89 27 4 249 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O78432 1.78e-17 84 24 7 299 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
Q47141 2.36e-17 84 25 5 304 1 hcaR Hca operon transcriptional activator HcaR Escherichia coli (strain K12)
Q1XDT2 6.93e-17 82 24 3 249 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
P48271 7.62e-17 82 26 4 250 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
P51205 8.35e-17 82 24 3 249 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
O19892 8.6e-17 82 26 4 257 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
Q6B936 1.01e-16 82 24 3 249 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
A0T0V5 1.37e-16 82 23 7 307 3 rbcR-A Probable RuBisCO transcriptional regulator Thalassiosira pseudonana
Q3MCB5 2.23e-16 81 26 4 249 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
Q8X4M5 2.23e-16 81 25 0 229 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
Q5N5I5 3.42e-16 80 23 4 247 3 cmpR HTH-type transcriptional activator CmpR Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Q9F1R2 3.42e-16 80 23 4 247 1 cmpR HTH-type transcriptional activator CmpR Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P42722 4.66e-16 80 23 2 252 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P25544 6.39e-16 79 24 4 263 3 rbcR RuBisCO operon transcriptional regulator Allochromatium vinosum
Q8YQ82 9.88e-16 79 26 4 249 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P27111 1.88e-15 78 24 0 229 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
P49518 2.08e-15 78 24 4 250 3 rbcR Probable RuBisCO transcriptional regulator Trieres chinensis
Q85G62 7.31e-15 77 25 4 251 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
Q55459 1.72e-14 75 21 4 267 1 cmpR HTH-type transcriptional activator CmpR Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P20667 2.22e-14 75 29 6 241 3 catR HTH-type transcriptional regulator CatR Pseudomonas putida
Q4G384 3.21e-14 75 23 4 248 3 rbcR Probable RuBisCO transcriptional regulator Emiliania huxleyi
A2CI69 1.23e-13 73 25 4 247 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
O32255 1.26e-13 73 22 7 289 3 yvbU Uncharacterized HTH-type transcriptional regulator YvbU Bacillus subtilis (strain 168)
B4E8S9 2.2e-13 72 25 2 235 1 ssuR HTH-type transcriptional regulator SsuR Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
B4E8V9 2.46e-13 72 26 2 232 1 cysB HTH-type transcriptional regulator CysB Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
P39592 7.39e-13 71 21 4 294 3 ywbI Uncharacterized HTH-type transcriptional regulator YwbI Bacillus subtilis (strain 168)
P52696 5.12e-12 68 20 0 230 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
P0ACR4 2.11e-11 66 25 3 235 1 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli (strain K12)
P0ACR5 2.11e-11 66 25 3 235 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACR6 2.11e-11 66 25 3 235 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O157:H7
P45105 2.67e-11 66 24 7 261 3 cysB HTH-type transcriptional regulator CysB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77171 2.71e-11 66 27 1 179 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
P25545 2.91e-11 66 22 5 245 3 cbbR HTH-type transcriptional regulator CbbR Xanthobacter flavus
Q47083 5.26e-11 65 27 4 238 1 cbl HTH-type transcriptional regulator cbl Escherichia coli (strain K12)
O35038 1.24e-10 64 22 1 237 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
O07906 1.37e-10 64 25 4 243 3 yraN Uncharacterized HTH-type transcriptional regulator YraN Bacillus subtilis (strain 168)
P77559 1.86e-10 63 24 6 247 3 ynfL Uncharacterized HTH-type transcriptional regulator YnfL Escherichia coli (strain K12)
Q47005 1.98e-10 63 22 2 240 3 nac Nitrogen assimilation regulatory protein nac Escherichia coli (strain K12)
P39647 3.19e-10 63 20 2 237 1 cysL HTH-type transcriptional regulator CysL Bacillus subtilis (strain 168)
P52693 4.72e-10 63 22 4 268 3 ntcB Probable nitrogen assimilation transcriptional activator Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52661 1.31e-09 62 26 7 265 1 gbpR HTH-type transcriptional regulator GbpR Azospirillum brasilense
P20668 1.59e-09 61 22 8 292 1 gltC Transcriptional dual regulator GltC Bacillus subtilis (strain 168)
P94403 1.99e-09 60 23 7 259 3 bsdA HTH-type transcriptional regulator BsdA Bacillus subtilis (strain 168)
P0A2Q4 2.36e-09 60 27 4 201 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 2.36e-09 60 27 4 201 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
Q57748 2.66e-09 60 20 3 245 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O34701 3.2e-09 60 22 6 246 3 yoaU Uncharacterized HTH-type transcriptional regulator YoaU Bacillus subtilis (strain 168)
P44821 7.5e-09 59 23 4 238 3 ilvY HTH-type transcriptional activator IlvY Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O68014 1.19e-08 58 24 7 250 1 benM HTH-type transcriptional regulator BenM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P23841 1.27e-08 58 22 2 261 3 xapR HTH-type transcriptional regulator XapR Escherichia coli (strain K12)
P71318 1.29e-08 58 20 4 302 3 oxyR Hydrogen peroxide-inducible genes activator Pectobacterium carotovorum subsp. carotovorum
P0ACR8 1.29e-08 58 24 6 293 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Shigella flexneri
P0ACR7 1.29e-08 58 24 6 293 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Escherichia coli (strain K12)
P0A9G1 1.4e-08 58 24 8 296 3 metR HTH-type transcriptional regulator MetR Shigella flexneri
P0A9F9 1.4e-08 58 24 8 296 1 metR HTH-type transcriptional regulator MetR Escherichia coli (strain K12)
P0A9G0 1.4e-08 58 24 8 296 3 metR HTH-type transcriptional regulator MetR Escherichia coli O157:H7
Q08598 1.78e-08 58 27 4 238 3 cbl HTH-type transcriptional regulator cbl Klebsiella aerogenes
P0A9F6 1.86e-08 58 25 7 244 1 gcvA Glycine cleavage system transcriptional activator Escherichia coli (strain K12)
P0A9F7 1.86e-08 58 25 7 244 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F8 1.86e-08 58 25 7 244 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O157:H7
P05827 2.14e-08 57 23 8 298 3 ilvY HTH-type transcriptional regulator IlvY Escherichia coli (strain K12)
Q04778 2.33e-08 57 24 6 245 3 alsR HTH-type transcriptional regulator AlsR Bacillus subtilis (strain 168)
P0A9F3 2.83e-08 57 22 3 230 3 cysB HTH-type transcriptional regulator CysB Escherichia coli (strain K12)
P0A9F4 2.83e-08 57 22 3 230 3 cysB HTH-type transcriptional regulator CysB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F5 2.83e-08 57 22 3 230 3 cysB HTH-type transcriptional regulator CysB Escherichia coli O157:H7
P0A2Q2 3.46e-08 57 23 8 291 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q3 3.46e-08 57 23 8 291 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhi
P94501 3.68e-08 57 24 9 300 1 gltR HTH-type transcriptional regulator GltR Bacillus subtilis (strain 168)
Q08597 6.65e-08 56 22 5 241 3 nac Nitrogen assimilation regulatory protein nac Klebsiella aerogenes
P45600 6.84e-08 56 23 6 252 1 cysB HTH-type transcriptional regulator CysB Klebsiella pneumoniae
Q9X725 1.51e-07 55 20 4 303 3 oxyR Hydrogen peroxide-inducible genes activator Dickeya chrysanthemi
Q06610 1.91e-07 55 21 3 274 3 rbcR RuBisCO operon transcriptional regulator Acidithiobacillus ferrooxidans
P52691 2.01e-07 55 25 6 247 3 lrrA Probable HTH-type transcriptional regulator LrrA Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52669 2.42e-07 54 25 5 228 3 ttuA HTH-type transcriptional regulator TtuA Agrobacterium vitis
Q9HWH8 3.4e-07 54 27 4 180 3 nmoR HTH-type transcriptional regulator NmoR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0ACQ4 6.02e-07 53 20 4 281 1 oxyR DNA-binding transcriptional dual regulator OxyR Escherichia coli (strain K12)
P0ACQ5 6.02e-07 53 20 4 281 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACQ6 6.02e-07 53 20 4 281 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O157:H7
P07774 6.37e-07 53 22 4 250 1 catM HTH-type transcriptional regulator CatM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P06614 9.09e-07 53 22 5 244 1 cysB HTH-type transcriptional regulator CysB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8VWE6 9.27e-07 53 24 6 237 3 lrhA Probable HTH-type transcriptional regulator LrhA Escherichia coli O157:H7
P94387 9.61e-07 53 22 4 250 3 ycgK Uncharacterized HTH-type transcriptional regulator YcgK Bacillus subtilis (strain 168)
P14145 1.29e-06 52 21 7 283 3 ampR HTH-type transcriptional activator AmpR Rhodobacter capsulatus
P36771 1.34e-06 52 24 6 237 1 lrhA Probable HTH-type transcriptional regulator LrhA Escherichia coli (strain K12)
P96194 1.49e-06 50 34 0 90 3 None Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region Azotobacter vinelandii
O34685 1.49e-06 52 22 4 246 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)
P0A4T7 4.85e-06 50 26 6 153 3 pcaQ HTH-type transcriptional regulator PcaQ Rhizobium radiobacter
P0A4T6 4.85e-06 50 26 6 153 3 pcaQ HTH-type transcriptional regulator PcaQ Agrobacterium fabrum (strain C58 / ATCC 33970)
P0DUU5 7.19e-06 50 23 11 310 1 aceR HTH-type transcriptional regulator AceR Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
P42427 8.59e-06 49 23 0 122 3 tfdT HTH-type transcriptional regulator TfdT Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
O33812 9.47e-06 49 27 3 138 3 None Uncharacterized HTH-type transcriptional regulator in lacR 5'region (Fragment) Staphylococcus xylosus
Q9X5P2 1.6e-05 49 24 0 179 2 oxyR Probable hydrogen peroxide-inducible genes activator Streptomyces viridosporus
P77744 1.72e-05 49 25 2 156 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
P55733 1.99e-05 49 23 6 263 3 syrM2 HTH-type transcriptional regulator SyrM 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P55576 2.91e-05 48 25 3 188 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P58332 3.57e-05 48 19 7 252 3 cbbR HTH-type transcriptional regulator CbbR Rhizobium meliloti (strain 1021)
P52686 4.38e-05 48 25 0 122 3 sdsB SDS degradation transcriptional activation protein Pseudomonas sp. (strain ATCC 19151)
Q9EXL7 7.35e-05 47 19 3 258 3 nagR HTH-type transcriptional activator NagR Ralstonia sp.
P56885 8.21e-05 47 21 6 252 3 cbbR HTH-type transcriptional regulator CbbR Sinorhizobium medicae (strain WSM419)
P44418 0.000117 46 20 6 287 3 oxyR Hydrogen peroxide-inducible genes activator Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O33945 0.000225 45 19 3 244 3 None Probable cat1 operon transcriptional activator Acinetobacter lwoffii
P10183 0.000229 45 21 7 294 3 nahR HTH-type transcriptional activator NahR Pseudomonas putida
Q46M57 0.000256 45 27 2 159 1 tfdR HTH-type transcriptional regulator TdfR Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q46M54 0.000268 45 27 2 159 1 tfdS HTH-type transcriptional regulator TfdS Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
O34827 0.000278 45 25 0 108 3 ykuM Uncharacterized HTH-type transcriptional regulator YkuM Bacillus subtilis (strain 168)
P52683 0.00029 45 26 8 186 3 smeR Carbapenem-hydrolyzing beta-lactamase transcriptional activator Serratia marcescens
P39127 0.000369 45 23 3 153 3 citR HTH-type transcriptional regulator CitR Bacillus subtilis (strain 168)
P16400 0.000498 44 20 6 265 3 mleR Malolactic fermentation system transcriptional activator Lactococcus lactis subsp. lactis (strain IL1403)
P52690 0.000532 44 19 4 255 3 cbbR HTH-type transcriptional regulator CbbR Cereibacter sphaeroides
P44876 0.00055 44 20 7 293 3 HI_0775 Uncharacterized HTH-type transcriptional regulator HI_0775 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P10151 0.000815 44 33 0 66 1 leuO HTH-type transcriptional regulator LeuO Escherichia coli (strain K12)
P0C6D1 0.00086 43 29 3 127 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P52685 0.000864 43 33 0 59 3 mauR Mau operon transcriptional activator Paracoccus denitrificans
A5F9F9 0.000891 43 29 3 127 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12360
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 58053 - 58967 (strand: 1)
Length 915 (nucleotides) / 304 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2009
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MEQYSWRHIDIFHAVMTTKSLTDAAQLLHTSQPTVSRELARFEQILGFRVFDRIKGRLHPTEQGLRLFEEVERSYYGLERISRAAESIRQFQHAQLTITCLPAFAQSLLPKVCHTFHGQYPDVNFEVAPQESPLLEEWLSAQRYDLGITEHTRTPPGTLQETLLTLSEVCVLPESHPLCSKAVLTPADFAHQNFISLSVTDSYRQIIDALFNEHQIARRMIMETHSAASVCAMVKEGLGISIVNPLTTMDCEGICIRPFSKRIPFTVSLIRPQHRPHSALTDIFITHLRQHMKIINKQLQQVTG

Flanking regions ( +/- flanking 50bp)

ATATCTGATTTGCTAAGGTCTATTCATCTCTGATATACATCTGGTGAATAATGGAACAATACTCCTGGCGTCATATTGATATTTTTCACGCGGTCATGACGACAAAAAGCCTGACGGATGCCGCGCAACTGCTGCATACCTCACAACCGACTGTCAGCCGGGAGCTTGCCCGTTTTGAGCAAATTCTGGGATTCCGTGTTTTTGACCGGATCAAAGGACGCCTGCACCCGACAGAGCAGGGGCTGCGGTTGTTTGAAGAGGTGGAACGCTCCTATTACGGACTGGAGCGCATCAGCCGTGCCGCCGAAAGCATCCGCCAGTTTCAGCACGCTCAGTTGACCATCACCTGCCTGCCCGCTTTTGCTCAGTCTCTTCTGCCAAAGGTCTGCCACACCTTTCACGGGCAGTATCCGGATGTCAATTTTGAAGTCGCTCCGCAGGAATCTCCGCTGCTGGAAGAGTGGCTGTCAGCACAGCGCTATGATTTGGGAATAACTGAACACACGCGGACACCACCGGGTACCTTACAGGAAACATTACTCACACTCAGTGAAGTGTGTGTGTTGCCGGAATCTCACCCGCTGTGCAGCAAAGCCGTTCTGACCCCTGCCGACTTTGCGCATCAGAATTTTATCAGCCTGTCTGTGACGGACAGTTACCGCCAGATAATTGATGCCCTGTTTAATGAACACCAAATTGCGCGCCGGATGATTATGGAAACACACAGCGCCGCATCTGTCTGCGCGATGGTTAAAGAGGGGCTTGGTATATCCATTGTCAATCCGCTGACAACAATGGATTGTGAGGGGATTTGTATCCGCCCGTTCAGCAAACGCATTCCATTCACCGTCAGCCTGATCCGCCCGCAACACCGCCCTCACTCCGCATTAACGGATATTTTTATTACGCATCTGCGGCAACATATGAAGATAATAAATAAGCAATTACAGCAGGTTACAGGTTAGTTTTTTCATCCAGCAGATACGGCAGCCAGTCTGGCGAGTGACCAAACCAT