Homologs in group_2009

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15090 FBDBKF_15090 63.5 Morganella morganii S1 lysR LysR family transcriptional regulator
EHELCC_11155 EHELCC_11155 63.5 Morganella morganii S2 lysR LysR family transcriptional regulator
NLDBIP_11500 NLDBIP_11500 63.5 Morganella morganii S4 lysR LysR family transcriptional regulator
LHKJJB_11360 LHKJJB_11360 63.5 Morganella morganii S3 lysR LysR family transcriptional regulator
HKOGLL_09970 HKOGLL_09970 63.5 Morganella morganii S5 lysR LysR family transcriptional regulator
F4V73_RS12360 F4V73_RS12360 63.8 Morganella psychrotolerans - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_2009

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2009

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P03030 1.84e-130 376 60 1 296 3 lysR Transcriptional activator protein LysR Escherichia coli (strain K12)
Q00678 4.46e-44 155 32 2 282 3 nocR Regulatory protein NocR Agrobacterium fabrum (strain C58 / ATCC 33970)
P35112 2.69e-43 153 31 2 282 3 nocR Regulatory protein NocR Agrobacterium tumefaciens (strain T37)
P72294 1.47e-25 106 26 4 262 3 occR Octopine catabolism/uptake operon regulatory protein OccR Rhizobium meliloti
P0A4T3 1.65e-24 103 27 5 293 1 occR Octopine catabolism/uptake operon regulatory protein OccR Rhizobium radiobacter
P0A4T4 1.65e-24 103 27 5 293 1 occR Octopine catabolism/uptake operon regulatory protein OccR Agrobacterium tumefaciens (strain Ach5)
P0DV33 1.06e-22 99 36 0 143 1 admX HTH-type transcriptional regulator AdmX Serratia plymuthica
A0T0G2 1.16e-22 99 25 7 301 3 rbcR Probable RuBisCO transcriptional regulator Phaeodactylum tricornutum (strain CCAP 1055/1)
P48271 1.14e-19 90 28 8 295 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
P37499 1.82e-18 87 24 0 245 3 yybE Uncharacterized HTH-type transcriptional regulator YybE Bacillus subtilis (strain 168)
Q6B936 4.62e-18 86 27 3 248 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
O19892 2.93e-17 84 25 6 311 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
Q85G62 5.68e-17 82 26 5 251 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
P73123 6.48e-17 83 28 12 317 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P49518 1.11e-16 82 23 3 252 3 rbcR Probable RuBisCO transcriptional regulator Trieres chinensis
P51205 2.67e-16 81 26 4 249 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
Q1XDT2 2.7e-16 81 26 4 249 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
A0T0V5 4.31e-16 80 24 7 295 3 rbcR-A Probable RuBisCO transcriptional regulator Thalassiosira pseudonana
O78432 4.72e-15 77 24 4 249 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
P52696 1.64e-14 76 20 0 253 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
P39592 7.18e-14 73 22 2 295 3 ywbI Uncharacterized HTH-type transcriptional regulator YwbI Bacillus subtilis (strain 168)
P27111 8.21e-14 73 23 0 230 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
P20668 9.49e-14 73 23 3 296 1 gltC Transcriptional dual regulator GltC Bacillus subtilis (strain 168)
B4E8V9 1.66e-13 73 26 3 240 1 cysB HTH-type transcriptional regulator CysB Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
Q8X4M5 2.98e-13 72 24 2 256 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
Q3MCB5 3.43e-13 72 25 8 294 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
P77171 1.15e-12 70 33 3 148 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
Q8YQ82 1.43e-12 70 25 8 294 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P39647 3.47e-12 69 20 3 295 1 cysL HTH-type transcriptional regulator CysL Bacillus subtilis (strain 168)
O35038 4.26e-12 68 26 3 238 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
A2CI69 5.05e-12 68 25 5 249 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
Q47141 6.64e-12 68 23 6 297 1 hcaR Hca operon transcriptional activator HcaR Escherichia coli (strain K12)
Q4G384 1.72e-11 67 22 3 248 3 rbcR Probable RuBisCO transcriptional regulator Emiliania huxleyi
Q57748 4.17e-11 65 24 5 248 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P20667 4.63e-11 65 27 4 239 3 catR HTH-type transcriptional regulator CatR Pseudomonas putida
P45105 5.72e-11 65 25 9 285 3 cysB HTH-type transcriptional regulator CysB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q04778 1.16e-10 64 22 7 292 3 alsR HTH-type transcriptional regulator AlsR Bacillus subtilis (strain 168)
B4E8S9 1.62e-10 64 24 3 236 1 ssuR HTH-type transcriptional regulator SsuR Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
O34701 2.11e-10 63 23 7 260 3 yoaU Uncharacterized HTH-type transcriptional regulator YoaU Bacillus subtilis (strain 168)
O32255 3.59e-10 63 20 6 287 3 yvbU Uncharacterized HTH-type transcriptional regulator YvbU Bacillus subtilis (strain 168)
O34685 5.93e-10 62 25 6 248 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)
P0A9F3 2.55e-09 60 24 5 240 3 cysB HTH-type transcriptional regulator CysB Escherichia coli (strain K12)
P0A9F4 2.55e-09 60 24 5 240 3 cysB HTH-type transcriptional regulator CysB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F5 2.55e-09 60 24 5 240 3 cysB HTH-type transcriptional regulator CysB Escherichia coli O157:H7
Q47083 2.59e-09 60 25 5 244 1 cbl HTH-type transcriptional regulator cbl Escherichia coli (strain K12)
P77559 3.47e-09 60 23 8 291 3 ynfL Uncharacterized HTH-type transcriptional regulator YnfL Escherichia coli (strain K12)
P94387 4.7e-09 60 23 3 242 3 ycgK Uncharacterized HTH-type transcriptional regulator YcgK Bacillus subtilis (strain 168)
P07774 4.88e-09 60 23 4 265 1 catM HTH-type transcriptional regulator CatM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P44821 5.06e-09 59 24 8 287 3 ilvY HTH-type transcriptional activator IlvY Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P42722 6.45e-09 59 21 1 241 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P39127 7.29e-09 59 26 1 146 3 citR HTH-type transcriptional regulator CitR Bacillus subtilis (strain 168)
P52691 7.78e-09 59 26 6 247 3 lrrA Probable HTH-type transcriptional regulator LrrA Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q5N5I5 8.92e-09 59 19 1 241 3 cmpR HTH-type transcriptional activator CmpR Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Q9F1R2 8.92e-09 59 19 1 241 1 cmpR HTH-type transcriptional activator CmpR Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P45600 9.91e-09 59 23 6 252 1 cysB HTH-type transcriptional regulator CysB Klebsiella pneumoniae
Q47005 1.24e-08 58 21 4 249 3 nac Nitrogen assimilation regulatory protein nac Escherichia coli (strain K12)
Q88JX7 1.56e-08 58 26 4 218 3 galR HTH-type transcriptional regulator GalR Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P14145 2.34e-08 57 23 10 287 3 ampR HTH-type transcriptional activator AmpR Rhodobacter capsulatus
O68014 2.35e-08 57 21 4 262 1 benM HTH-type transcriptional regulator BenM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P52693 3.29e-08 57 22 4 277 3 ntcB Probable nitrogen assimilation transcriptional activator Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
O07906 6.48e-08 56 22 5 290 3 yraN Uncharacterized HTH-type transcriptional regulator YraN Bacillus subtilis (strain 168)
P0ACR8 9.7e-08 56 20 2 281 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Shigella flexneri
P0ACR7 9.7e-08 56 20 2 281 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Escherichia coli (strain K12)
P23841 1.13e-07 55 21 4 277 3 xapR HTH-type transcriptional regulator XapR Escherichia coli (strain K12)
P94403 1.2e-07 55 22 7 253 3 bsdA HTH-type transcriptional regulator BsdA Bacillus subtilis (strain 168)
P06614 1.26e-07 55 23 5 240 1 cysB HTH-type transcriptional regulator CysB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P25544 2.66e-07 54 22 3 256 3 rbcR RuBisCO operon transcriptional regulator Allochromatium vinosum
P25545 3.62e-07 54 20 6 248 3 cbbR HTH-type transcriptional regulator CbbR Xanthobacter flavus
Q55459 6.47e-07 53 20 1 235 1 cmpR HTH-type transcriptional activator CmpR Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P52661 1.11e-06 53 22 4 249 1 gbpR HTH-type transcriptional regulator GbpR Azospirillum brasilense
P72131 1.43e-06 52 24 8 307 1 ptxR HTH-type transcriptional regulator PtxR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9EXL7 2.19e-06 52 21 2 211 3 nagR HTH-type transcriptional activator NagR Ralstonia sp.
A7Z5E4 3.01e-06 51 24 7 250 3 yofA HTH-type transcriptional regulator YofA Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)
P10151 3.38e-06 51 39 0 64 1 leuO HTH-type transcriptional regulator LeuO Escherichia coli (strain K12)
Q08598 4.05e-06 51 25 5 244 3 cbl HTH-type transcriptional regulator cbl Klebsiella aerogenes
P52595 4.22e-06 51 22 7 261 3 cbbR HTH-type transcriptional regulator CbbR Rhodospirillum rubrum
Q9JXW7 8.78e-06 50 26 1 133 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P46924 9.11e-06 50 39 0 64 3 leuO Probable HTH-type transcriptional regulator LeuO Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A4T7 1.46e-05 49 22 0 143 3 pcaQ HTH-type transcriptional regulator PcaQ Rhizobium radiobacter
P0A4T6 1.46e-05 49 22 0 143 3 pcaQ HTH-type transcriptional regulator PcaQ Agrobacterium fabrum (strain C58 / ATCC 33970)
Q9JPU9 1.47e-05 49 26 1 133 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
O33812 1.61e-05 49 25 3 139 3 None Uncharacterized HTH-type transcriptional regulator in lacR 5'region (Fragment) Staphylococcus xylosus
P30864 1.65e-05 49 29 2 126 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q9HWH8 2.18e-05 48 25 9 250 3 nmoR HTH-type transcriptional regulator NmoR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0ACR4 2.51e-05 48 21 3 238 1 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli (strain K12)
P0ACR5 2.51e-05 48 21 3 238 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACR6 2.51e-05 48 21 3 238 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O157:H7
Q08597 2.53e-05 48 20 4 249 3 nac Nitrogen assimilation regulatory protein nac Klebsiella aerogenes
P71025 3.29e-05 48 22 8 251 3 czcR HTH-type transcriptional regulator CzcR Bacillus subtilis (strain 168)
P77309 5.78e-05 47 23 7 243 3 yneJ Uncharacterized HTH-type transcriptional regulator YneJ Escherichia coli (strain K12)
P52686 6.34e-05 47 24 0 122 3 sdsB SDS degradation transcriptional activation protein Pseudomonas sp. (strain ATCC 19151)
P05827 6.73e-05 47 24 8 245 3 ilvY HTH-type transcriptional regulator IlvY Escherichia coli (strain K12)
P77744 7.43e-05 47 24 2 151 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
P16931 0.000105 47 26 1 137 3 dgdR HTH-type transcriptional regulator DgdR Burkholderia cepacia
P75836 0.00012 46 24 2 137 3 ycaN Uncharacterized HTH-type transcriptional regulator YcaN Escherichia coli (strain K12)
P67668 0.000121 46 22 3 210 3 BQ2027_MB2303C Uncharacterized HTH-type transcriptional regulator Mb2303c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMF3 0.000121 46 22 3 210 1 Rv2282c Uncharacterized HTH-type transcriptional regulator Rv2282c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMF2 0.000121 46 22 3 210 3 MT2340 Uncharacterized HTH-type transcriptional regulator MT2340 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A9F6 0.000162 46 23 5 246 1 gcvA Glycine cleavage system transcriptional activator Escherichia coli (strain K12)
P0A9F7 0.000162 46 23 5 246 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F8 0.000162 46 23 5 246 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O157:H7
P52679 0.000164 46 26 7 206 1 pcpR PCP degradation transcriptional activation protein Sphingobium chlorophenolicum
P55181 0.00018 46 22 0 141 3 yxjO Uncharacterized HTH-type transcriptional regulator YxjO Bacillus subtilis (strain 168)
P33634 0.000199 45 22 2 227 3 yfiE Uncharacterized HTH-type transcriptional regulator YfiE Escherichia coli (strain K12)
O33945 0.000209 45 24 0 125 3 None Probable cat1 operon transcriptional activator Acinetobacter lwoffii
P58332 0.00021 45 24 2 125 3 cbbR HTH-type transcriptional regulator CbbR Rhizobium meliloti (strain 1021)
P52689 0.000233 45 23 5 190 3 ltrA Probable HTH-type transcriptional regulator LtrA Klebsiella pneumoniae
P52676 0.000235 45 29 4 122 3 nmcR Carbapenem-hydrolyzing beta-lactamase transcriptional activator Enterobacter cloacae
P37641 0.000263 45 23 0 126 3 yhjC Uncharacterized HTH-type transcriptional regulator YhjC Escherichia coli (strain K12)
P42427 0.000284 45 22 0 121 3 tfdT HTH-type transcriptional regulator TfdT Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q46M57 0.000309 45 27 2 128 1 tfdR HTH-type transcriptional regulator TdfR Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
P05051 0.000327 45 29 2 120 3 ampR HTH-type transcriptional activator AmpR Enterobacter cloacae
Q46M54 0.000329 45 27 2 128 1 tfdS HTH-type transcriptional regulator TfdS Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
P67662 0.000376 45 22 0 122 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli (strain K12)
P67663 0.000376 45 22 0 122 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67664 0.000376 45 22 0 122 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O157:H7
P56885 0.000405 45 28 4 128 3 cbbR HTH-type transcriptional regulator CbbR Sinorhizobium medicae (strain WSM419)
P52666 0.000527 44 26 7 246 3 budR HTH-type transcriptional regulator BudR Raoultella terrigena
P10183 0.000618 44 22 9 272 3 nahR HTH-type transcriptional activator NahR Pseudomonas putida
P0A2Q4 0.000631 44 23 5 189 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 0.000631 44 23 5 189 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
P0A2Q2 0.00069 44 24 8 245 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q3 0.00069 44 24 8 245 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhi
Q05840 0.000816 43 35 0 68 3 clcR HTH-type transcriptional regulator ClcR Pseudomonas putida

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01655
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 394181 - 395107 (strand: -1)
Length 927 (nucleotides) / 308 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2009
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MKTPFSWRHIEIFHAVMTTQNLTEAADLLKTSQPTVSRELSRLEQLLSFKLFDRIKGRLQPTTEGLRFFEEVQRSYYGLDRIITAANSIRHFHQAELNITCLPAFAQSLLPSICQQFLSQYPEVNLTIVPQESPLLEEWLSAQHYDLGLTEHTQTPAGTQQETLLTLNEVAILPKSHVLSKKALLQPQDFHQTRFISLSANDSYRQLIDAMFIKQGITRQLIMETQSAASICAMVSKGIGVSIVNPITALDYQYSDLCIRPLSFTIPFTVSLITPSHRPSSQLVRYFIDVMKTTLANYPKQLTHAFTR

Flanking regions ( +/- flanking 50bp)

AAATATCAAATTAGCTATAGTCTATTCACTTGTGATATAGGATAAAATTTATGAAAACTCCATTTAGTTGGCGACATATTGAAATTTTTCATGCAGTGATGACCACACAAAACCTAACCGAAGCGGCAGATTTACTGAAAACGTCTCAACCCACAGTCAGTCGCGAACTATCACGTCTTGAACAGCTATTGTCATTTAAGCTATTTGATAGAATTAAAGGTCGCCTACAACCTACCACGGAAGGATTAAGATTTTTTGAAGAGGTACAGCGCTCTTATTATGGACTTGATCGCATTATTACCGCAGCCAATAGTATTCGCCATTTTCATCAAGCGGAATTAAATATCACCTGTTTACCGGCATTTGCTCAATCACTATTACCCTCAATTTGCCAACAATTTCTCAGCCAATATCCCGAGGTTAATTTAACGATAGTGCCACAGGAGTCTCCTTTATTAGAGGAGTGGTTATCTGCACAACATTATGACTTAGGGCTAACAGAGCACACACAAACACCTGCCGGAACCCAACAAGAAACACTGCTAACGTTAAATGAAGTCGCTATTTTGCCAAAGTCTCATGTGTTAAGTAAAAAAGCATTACTGCAGCCACAAGACTTTCATCAAACTCGTTTTATCAGCTTATCTGCTAATGATAGTTATCGACAACTTATTGATGCTATGTTTATTAAACAGGGGATCACTCGACAATTGATCATGGAAACACAAAGTGCGGCCTCAATTTGTGCCATGGTGAGTAAAGGCATTGGTGTTTCTATCGTTAACCCTATTACTGCCCTTGATTATCAATATAGTGATCTCTGTATACGGCCACTGAGTTTTACCATTCCATTTACGGTGAGTTTGATCACACCATCTCATCGCCCCTCATCACAACTTGTGCGCTATTTTATTGATGTGATGAAAACCACTTTAGCCAATTATCCAAAACAATTAACTCACGCGTTCACCCGATAATGACAACCAATGAGGCGAAGAAGCAAACCAGTCAACCAGAAAATCCAGTA