Homologs in group_2022

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15175 FBDBKF_15175 80.7 Morganella morganii S1 ugpQ Glycerophosphoryl diester phosphodiesterase
EHELCC_11070 EHELCC_11070 80.7 Morganella morganii S2 ugpQ Glycerophosphoryl diester phosphodiesterase
NLDBIP_11415 NLDBIP_11415 80.7 Morganella morganii S4 ugpQ Glycerophosphoryl diester phosphodiesterase
LHKJJB_11275 LHKJJB_11275 80.7 Morganella morganii S3 ugpQ Glycerophosphoryl diester phosphodiesterase
HKOGLL_09885 HKOGLL_09885 80.7 Morganella morganii S5 ugpQ Glycerophosphoryl diester phosphodiesterase
PMI_RS01730 PMI_RS01730 56.3 Proteus mirabilis HI4320 - glycerophosphodiester phosphodiesterase family protein

Distribution of the homologs in the orthogroup group_2022

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2022

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WLF0 2.29e-52 175 41 8 272 3 MT2337 Uncharacterized protein MT2337 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P9WLF1 2.76e-52 175 41 8 272 1 Rv2277c Uncharacterized protein Rv2277c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
O07592 2.41e-12 68 41 1 99 3 yhdW Putative glycerophosphodiester phosphodiesterase YhdW Bacillus subtilis (strain 168)
P37965 8.38e-12 67 27 3 158 1 glpQ Glycerophosphodiester phosphodiesterase Bacillus subtilis (strain 168)
A0A8F4N283 4.56e-11 64 26 2 160 1 bagdpd Glycerophosphodiester phosphodiesterase Bacillus altitudinis
P54527 4.95e-10 61 25 8 259 4 yqiK Uncharacterized protein YqiK Bacillus subtilis (strain 168)
Q8RB32 2.1e-09 60 28 2 143 1 UgpQ Glycerophosphodiester phosphodiesterase Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q3T0T0 2.18e-06 51 36 1 91 2 GDE1 Glycerophosphodiester phosphodiesterase 1 Bos taurus
P47625 2.25e-06 51 29 2 112 4 MG385 Uncharacterized protein MG385 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P9WMU3 2.26e-06 51 32 1 101 1 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMU2 2.26e-06 51 32 1 101 3 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9JL56 8.23e-06 50 31 3 112 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Mus musculus
P75212 8.99e-06 49 27 6 164 4 MPN_566 Uncharacterized protein MG385 homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q08959 3.02e-05 48 29 1 118 1 PGC1 Phosphatidylglycerol phospholipase C Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9NZC3 3.12e-05 48 32 1 91 1 GDE1 Glycerophosphodiester phosphodiesterase 1 Homo sapiens
Q9JL55 3.75e-05 47 32 1 91 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Rattus norvegicus
P10908 5.35e-05 47 29 1 106 1 ugpQ Glycerophosphodiester phosphodiesterase, cytoplasmic Escherichia coli (strain K12)
Q0VGK4 0.000404 44 29 1 111 2 Gdpd1 Lysophospholipase D GDPD1 Rattus norvegicus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12270
Feature type CDS
Gene -
Product glycerophosphodiester phosphodiesterase family protein
Location 38564 - 39373 (strand: 1)
Length 810 (nucleotides) / 269 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2022
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03009 Glycerophosphoryl diester phosphodiesterase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0584 Lipid transport and metabolism (I) I Glycerophosphoryl diester phosphodiesterase

Protein Sequence

MTTFAAPQIIAHRGATADAPENTLYAIDKALNNHADAIWVTLQLSKDNQVVLYRPSDLTTLTDKAGPVSRYTAGELAGADAARDYNQKNNTKINATIPTLDTVLSRYPDTLFYLDIKSPDAEPAMFARQLDDVLTRHQAKQRIRVYSTNPDYLTALPASIPVFESRDTTRNALAGSLITHTCDISTQAQPRWYGFELHRKVEIVETFTLGEARSPAILTWDKTAADCFRKNGKNSIILFGIKTPADLALATELGADGVMVDSLLNLKQK

Flanking regions ( +/- flanking 50bp)

GATGGATTATGAAAAAACTATTTTCTGCTCTTTTTCTGAGTTGCATCACCATGACAACCTTTGCCGCACCACAAATTATTGCTCATCGCGGAGCGACCGCTGACGCACCTGAAAATACTCTGTATGCCATTGATAAAGCACTGAATAACCATGCAGATGCTATCTGGGTAACGCTTCAGTTATCAAAAGACAACCAGGTTGTGTTATACCGCCCGTCAGATCTGACAACACTGACAGATAAAGCAGGTCCGGTTTCCCGTTATACTGCGGGAGAACTGGCCGGAGCTGATGCCGCCCGTGATTATAATCAAAAAAATAATACCAAAATTAATGCAACTATCCCGACGCTGGATACCGTACTCAGCCGCTATCCGGATACCCTCTTTTATCTGGATATTAAATCCCCTGATGCAGAACCTGCCATGTTTGCCCGCCAACTGGATGACGTACTGACCCGTCATCAGGCAAAACAACGGATCCGCGTCTATTCCACCAATCCGGACTATCTTACCGCCCTTCCTGCTTCCATTCCTGTATTTGAAAGCCGGGATACCACCCGGAATGCACTCGCGGGCAGCCTGATAACGCATACCTGTGATATCAGCACACAAGCACAGCCGCGCTGGTATGGGTTTGAATTACATCGCAAAGTTGAAATCGTTGAAACCTTTACACTCGGTGAGGCACGCTCACCTGCGATACTGACCTGGGATAAAACAGCAGCGGATTGTTTCAGAAAGAATGGCAAAAACAGTATTATTTTATTCGGTATTAAAACACCGGCAGATTTAGCATTAGCCACCGAACTGGGTGCAGATGGCGTAATGGTCGACTCGCTGCTCAATCTGAAACAGAAATAATTCTTTATCGTAATATCACTAAGTTAATTAAATAATTTTAATAAATAAGG