Homologs in group_2024

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15185 FBDBKF_15185 91.6 Morganella morganii S1 pepD Di- or tripeptidase
EHELCC_11060 EHELCC_11060 91.6 Morganella morganii S2 pepD Di- or tripeptidase
NLDBIP_11405 NLDBIP_11405 91.6 Morganella morganii S4 pepD Di- or tripeptidase
LHKJJB_11265 LHKJJB_11265 91.6 Morganella morganii S3 pepD Di- or tripeptidase
HKOGLL_09875 HKOGLL_09875 91.6 Morganella morganii S5 pepD Di- or tripeptidase
PMI_RS01745 PMI_RS01745 78.1 Proteus mirabilis HI4320 - aminoacyl-histidine dipeptidase

Distribution of the homologs in the orthogroup group_2024

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2024

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15288 0.0 761 74 0 485 1 pepD Cytosol non-specific dipeptidase Escherichia coli (strain K12)
P44817 0.0 529 54 5 495 3 pepD Cytosol non-specific dipeptidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P54542 1.17e-09 63 23 11 312 3 yqjE Uncharacterized protein YqjE Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12260
Feature type CDS
Gene pepD
Product beta-Ala-His dipeptidase
Location 35671 - 37131 (strand: 1)
Length 1461 (nucleotides) / 486 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2024
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01546 Peptidase family M20/M25/M40
PF07687 Peptidase dimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2195 Amino acid transport and metabolism (E) E Di- or tripeptidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01270 dipeptidase D [EC:3.4.13.-] Glutathione metabolism
Metabolic pathways		 -

Protein Sequence

MSELSQLFPQPLWDIFAKICSIPHPSHHEEQLAAHIIEWAKEKEFHVERDSVGNILIRKPATKGLENRKAVVLQAHLDMVPQKNNDTAHDFEKDPIQPYIDGDWVTAKGTTLGADNGVGMASALAVLADDSVKHGPLEVLLTMTEETGMDGAFGLQPGWLQADILINTDSEEEGEIYMGCAGGIDVTTTLALTREAVPAGYKTFTLTLKGLKGGHSGGDVHLGLGNANKLLARFLAGHGAELQARLIDFQGGTLRNAIPREGYITLAIPADNSAKLETLRAEFENLLKDELAQKEKNLQVTLTAADTAQGALTADVQRRLINMLNVMPNGVIRMSDVVQGVVETSLNVGVINMNNDRAQIICLVRSLIESGKSNVVSMLTSLADLSGAQIVAEGGYPGWQPDANSPVMHLVSETYQQLFDKTPNVMVIHAGLECGLFKKPYPDMDMVSIGPTITGAHSPDEQVHIKSVGQYWQLLTAILKAIPEKA

Flanking regions ( +/- flanking 50bp)

TCAGGTATCCTCATCCTAATAATGAAAAATGCAGTAACAGGAGATCGAACGTGTCTGAACTATCACAATTATTTCCGCAGCCGCTGTGGGATATTTTTGCCAAAATCTGTTCTATACCGCATCCGTCACACCATGAAGAGCAGCTTGCTGCGCATATCATTGAGTGGGCGAAAGAGAAAGAATTTCATGTGGAACGTGACAGCGTCGGCAATATTCTGATCCGCAAACCTGCCACAAAGGGACTGGAAAACCGGAAAGCCGTTGTATTGCAGGCTCACCTGGATATGGTTCCGCAAAAAAATAATGATACTGCTCACGATTTCGAAAAAGATCCGATTCAGCCTTATATTGACGGCGACTGGGTTACCGCAAAAGGCACCACATTAGGCGCAGATAACGGCGTGGGCATGGCTTCTGCGCTGGCAGTTCTGGCTGATGATTCAGTCAAGCACGGTCCGCTGGAAGTCCTGCTGACCATGACAGAAGAAACCGGAATGGACGGCGCATTCGGTCTTCAGCCGGGCTGGTTACAGGCAGATATCCTGATTAACACCGACTCCGAAGAAGAAGGTGAGATCTATATGGGTTGTGCGGGCGGTATTGATGTTACCACCACGCTGGCACTGACCCGTGAAGCAGTTCCTGCAGGTTACAAAACCTTTACCCTGACACTCAAAGGGCTGAAAGGCGGGCATTCAGGCGGAGATGTACATCTCGGTCTGGGCAATGCCAATAAATTACTGGCTCGTTTCTTAGCCGGTCACGGCGCGGAACTTCAGGCGCGTCTGATTGATTTTCAGGGCGGAACACTGCGCAATGCTATCCCGCGCGAAGGCTATATCACGCTGGCAATTCCTGCGGATAACAGTGCAAAACTGGAAACGCTGCGGGCTGAGTTTGAAAACCTGCTCAAAGATGAGCTTGCTCAGAAAGAGAAAAATCTTCAGGTTACGCTGACTGCGGCAGACACAGCTCAGGGCGCACTGACCGCTGATGTACAGCGTCGTCTTATCAATATGCTGAATGTTATGCCGAACGGTGTTATCCGTATGAGTGATGTGGTGCAGGGCGTTGTTGAGACCTCACTGAACGTCGGCGTGATCAATATGAACAATGATCGTGCACAAATCATCTGTCTGGTTCGTTCTCTGATCGAATCCGGTAAATCCAATGTGGTCAGCATGCTGACATCACTGGCCGATCTCAGCGGGGCGCAGATTGTTGCCGAAGGCGGCTATCCGGGCTGGCAGCCGGATGCAAACTCGCCGGTGATGCATCTGGTCAGCGAAACATATCAGCAACTGTTTGATAAAACACCGAATGTAATGGTTATCCATGCCGGTCTTGAGTGCGGCTTATTCAAAAAACCGTATCCGGATATGGACATGGTTTCTATCGGACCAACCATTACCGGCGCTCACTCACCGGATGAGCAGGTACACATTAAGAGTGTCGGACAATACTGGCAGTTACTGACCGCTATCTTAAAAGCGATCCCTGAAAAAGCGTAATTACGCTATTCAGTTAACCGGCGGTGATGCAAATCCCGCCGGTTTTTTAT