Homologs in group_2045

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15330 FBDBKF_15330 87.7 Morganella morganii S1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
EHELCC_10915 EHELCC_10915 87.7 Morganella morganii S2 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
NLDBIP_11260 NLDBIP_11260 87.7 Morganella morganii S4 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
LHKJJB_11120 LHKJJB_11120 87.7 Morganella morganii S3 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
HKOGLL_09730 HKOGLL_09730 87.7 Morganella morganii S5 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
PMI_RS01885 PMI_RS01885 66.0 Proteus mirabilis HI4320 tyrA bifunctional chorismate mutase/prephenate dehydrogenase

Distribution of the homologs in the orthogroup group_2045

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2045

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q02287 0.0 556 72 0 372 3 tyrA T-protein Enterobacter agglomerans
P07023 0.0 550 71 0 373 1 tyrA T-protein Escherichia coli (strain K12)
P43902 6.49e-152 436 56 1 370 1 tyrA T-protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8EH68 2.12e-145 419 55 1 369 3 tyrA T-protein Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q58029 9.38e-39 146 32 6 275 3 MJ0612 Probable arogenate/prephenate dehydrogenase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q944B6 2.51e-09 62 25 8 260 1 TYRAAT1 Arogenate dehydrogenase 1, chloroplastic Arabidopsis thaliana
F2RB78 6.72e-09 60 28 7 211 3 cmlC 4-amino-4-deoxyprephenate dehydrogenase Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745)
P72540 1.41e-07 56 25 1 172 3 papC 4-amino-4-deoxyprephenate dehydrogenase Streptomyces pristinaespiralis
Q9LMR3 5.17e-06 51 24 8 248 1 TYRAAT2 Arogenate dehydrogenase 2, chloroplastic Arabidopsis thaliana
Q57696 7.09e-06 47 43 0 46 1 aroQ Chorismate mutase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O67085 5.86e-05 48 43 0 46 3 pheA Bifunctional chorismate mutase/prephenate dehydratase Aquifex aeolicus (strain VF5)
Q02286 0.000354 45 26 6 210 3 pheA Bifunctional chorismate mutase/prephenate dehydratase Enterobacter agglomerans

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12120
Feature type CDS
Gene tyrA
Product bifunctional chorismate mutase/prephenate dehydrogenase
Location 9144 - 10265 (strand: -1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2045
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01817 Chorismate mutase type II
PF02153 Prephenate dehydrogenase, nucleotide-binding domain
PF20463 Prephenate dehydrogenase, dimerization domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1605 Amino acid transport and metabolism (E) E Chorismate mutase

Kegg Ortholog Annotation(s)

Protein Sequence

MSGVLTHLRDQIDEVDKSLLTLLAKRLQLVAEVGEVKSQHGLPVYAPDREAAMLASRREEAESLGVPPDLIEDILRRIMRESYSRENDKGFKKLNEHARPVVIVGGNGKMGQLFRRMLELSGYTVRSLDSGDWDNAADLVQDAGMVIISVPIHLTEQVIKQLPPLADDCLLVDLTSVKEGPLQAMLAVHSGPVLGLHPMFGPDVSSFAKQVVAFCDGRYPEQYQWFLEQIAVWGAHLQGIKAHEHDRNMRYIQALRHFTSFAYGRYLAKENVDLSQLLSLSSPIYRLELVMVGRLFAQDPQLYADIIMSSESNLDVIEDYHREFGEALLVLENRDKAEFIAQFTSVSEWFGEHAQHFMKESNRLLPQANDSRR

Flanking regions ( +/- flanking 50bp)

GCGCGTCATCCGGTTACAGCAGGCAGGATAACTAAAACAGGGTGGGTTGTATGTCCGGCGTATTAACACATTTACGTGATCAAATTGATGAAGTCGATAAATCGCTGCTGACATTGCTGGCAAAGCGTTTGCAGTTAGTGGCAGAAGTCGGTGAGGTAAAAAGTCAGCACGGACTGCCGGTTTATGCGCCTGACCGCGAGGCCGCAATGCTGGCATCCCGGCGGGAGGAAGCCGAATCACTCGGCGTTCCGCCGGATCTGATTGAGGATATCCTGCGCCGGATCATGCGGGAATCCTATTCCCGCGAGAATGATAAGGGCTTTAAAAAACTTAATGAGCACGCCCGCCCGGTTGTGATTGTCGGCGGTAACGGCAAAATGGGGCAACTATTCCGCAGAATGCTGGAACTGTCCGGTTATACCGTCCGCAGCCTGGACAGCGGAGACTGGGATAACGCGGCTGATCTGGTTCAGGATGCCGGCATGGTAATCATCAGTGTGCCTATCCACCTGACAGAGCAGGTTATCAAACAGCTTCCTCCTCTGGCAGATGATTGCCTTCTGGTTGATCTGACCTCCGTCAAGGAGGGGCCGTTACAGGCGATGCTGGCGGTTCATAGCGGACCGGTGCTCGGATTGCACCCGATGTTCGGACCGGATGTCAGCAGTTTCGCCAAGCAGGTGGTTGCGTTTTGTGATGGTCGTTATCCGGAGCAATACCAGTGGTTTCTTGAGCAAATCGCAGTATGGGGCGCACATTTACAGGGTATAAAAGCGCATGAGCATGATCGCAATATGCGCTATATCCAGGCGCTGCGTCACTTTACCAGTTTTGCTTACGGGCGCTATCTGGCAAAAGAAAATGTCGATCTTTCTCAATTACTGTCGCTATCATCGCCTATCTACCGGCTTGAGCTGGTAATGGTCGGGCGGTTGTTTGCCCAGGATCCGCAGTTATATGCAGATATTATTATGTCATCAGAAAGTAATCTCGATGTGATTGAAGATTATCACCGGGAGTTTGGTGAGGCACTGCTGGTGCTGGAAAACCGTGACAAAGCAGAATTTATCGCACAGTTCACGTCCGTCAGTGAGTGGTTTGGTGAGCACGCACAGCACTTTATGAAAGAGAGCAACCGATTATTACCACAGGCGAATGACAGCAGACGTTGATAGACGGGAAGGAATAAAAAAGCGGATGATATCATCCGCTTTTTTGCTTT