Homologs in group_2403

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19265 FBDBKF_19265 92.5 Morganella morganii S1 hybO hydrogenase 2 small subunit
EHELCC_07550 EHELCC_07550 92.5 Morganella morganii S2 hybO hydrogenase 2 small subunit
NLDBIP_07875 NLDBIP_07875 92.5 Morganella morganii S4 hybO hydrogenase 2 small subunit
LHKJJB_07410 LHKJJB_07410 92.5 Morganella morganii S3 hybO hydrogenase 2 small subunit
HKOGLL_03520 HKOGLL_03520 92.5 Morganella morganii S5 hybO hydrogenase 2 small subunit
PMI_RS00150 PMI_RS00150 74.6 Proteus mirabilis HI4320 hybO hydrogenase 2 small subunit

Distribution of the homologs in the orthogroup group_2403

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2403

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69741 0.0 612 85 1 373 1 hybO Hydrogenase-2 small chain Escherichia coli (strain K12)
P69742 0.0 612 85 1 373 3 hybO Hydrogenase-2 small chain Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69743 0.0 612 85 1 373 3 hybO Hydrogenase-2 small chain Escherichia coli O157:H7
P18637 3.84e-94 288 43 3 329 3 hupA Uptake hydrogenase small subunit Rhizobium leguminosarum bv. viciae
P31892 8.8e-91 280 44 1 293 1 hoxK Uptake hydrogenase small subunit Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P31884 3.4e-90 278 49 3 293 1 hydA Quinone-reactive Ni/Fe-hydrogenase small chain Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
P33375 5.01e-90 278 44 3 303 3 hupS Uptake hydrogenase small subunit Alcaligenes hydrogenophilus
P12635 5.83e-90 278 44 2 296 3 hupA Uptake hydrogenase small subunit Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
O33405 1.36e-89 277 45 2 303 1 hoxS Uptake hydrogenase small subunit Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)
P21950 6.79e-89 275 44 1 293 1 hoxK Uptake hydrogenase small subunit Azotobacter vinelandii
P17633 6.52e-86 267 43 2 293 3 hupA Uptake hydrogenase small subunit Rubrivivax gelatinosus
Q83RW9 2.57e-85 266 43 2 303 3 hyaA Hydrogenase-1 small chain Shigella flexneri
P69739 2.96e-85 266 43 2 303 1 hyaA Hydrogenase-1 small chain Escherichia coli (strain K12)
P69740 2.96e-85 266 43 2 303 3 hyaA Hydrogenase-1 small chain Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P12943 1.25e-83 259 45 4 281 1 hydA Periplasmic [NiFe] hydrogenase small subunit Megalodesulfovibrio gigas
Q06173 3.18e-83 259 44 3 292 1 hynB1 Periplasmic [NiFe] hydrogenase small subunit 1 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P18187 4.77e-83 258 47 4 290 1 hydA Periplasmic [NiFe] hydrogenase small subunit Solidesulfovibrio fructosivorans
Q46045 5.66e-83 260 43 2 293 3 hyaA Hydrogenase-1 small chain Citrobacter freundii
P18190 1.49e-82 258 41 4 293 3 hupA Uptake hydrogenase small subunit Azotobacter chroococcum mcd 1
P21853 5.25e-82 256 45 3 292 1 hydA Periplasmic [NiFe] hydrogenase small subunit Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F)
P61429 2.75e-81 254 43 5 303 3 hynB2 Periplasmic [NiFe] hydrogenase small subunit 2 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P15283 2.65e-78 248 41 1 293 3 hupA Uptake hydrogenase small subunit Rhodobacter capsulatus
P13061 3.26e-78 246 43 5 292 1 hydA Periplasmic [NiFe] hydrogenase small subunit Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
P13063 9.91e-55 185 36 9 307 1 None Periplasmic [NiFeSe] hydrogenase small subunit Desulfomicrobium baculatum
Q50225 1.79e-39 147 33 13 324 2 vhtG F420 non-reducing hydrogenase II small subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q50248 3.28e-38 144 33 13 324 2 vhoG F420 non-reducing hydrogenase I small subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12025
Feature type CDS
Gene hybO
Product hydrogenase 2 small subunit
Location 559244 - 560365 (strand: 1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2403
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit
PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1740 Energy production and conversion (C) C Ni,Fe-hydrogenase I small subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06282 hydrogenase small subunit [EC:1.12.99.6] Nitrotoluene degradation
Microbial metabolism in diverse environments
Two-component system		 -

Protein Sequence

MIEDNTFITSEGINRRGFLKLCAALAATMGLSSNASAEIAASVSRKDCPPVIWISAQECTGCTESLLRATHPTIENLLLDMISLEYHEVLSAAFGHQAEANKHNAIEKYKGKYVLVVDGSVPLKDDGIYCMIAGEPIADHIRKAAENAAAIIAIGSCAAWGGVAAAGDNPTGAVGLQEVLPGKTIINIPGCPPNPHNFLATVVHIITYGTVPKLDSKNRPLFAYGRLIHEHCERRAHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEAGVGFHKGIHQLASVQNPTPRAEKPDVDLKEGGVVSGGAIGLLGGVVGLVAGVSVMAVRELGRQQKKNDADSPRGE

Flanking regions ( +/- flanking 50bp)

TTAAAAAAACGATTACATTATGTCTCAAATAAACACTACGGAATAATAGAATGATTGAAGATAATACTTTTATCACTTCTGAGGGTATTAACCGGCGCGGCTTTCTGAAACTCTGTGCTGCATTAGCAGCAACTATGGGTCTCAGTTCAAATGCCTCTGCCGAAATTGCGGCGTCCGTCAGCCGTAAGGATTGTCCCCCCGTCATCTGGATATCTGCACAGGAGTGTACCGGTTGCACTGAGTCCCTGCTCCGGGCGACGCACCCGACAATCGAAAACCTCTTACTTGATATGATTTCTCTGGAGTACCACGAGGTACTCTCCGCCGCATTTGGTCATCAGGCCGAAGCGAATAAGCACAATGCCATCGAGAAATACAAAGGCAAGTATGTGCTGGTGGTGGATGGCTCTGTGCCGCTGAAAGATGATGGCATTTATTGCATGATCGCGGGCGAACCGATTGCCGACCACATCCGTAAAGCGGCTGAGAATGCGGCTGCGATTATTGCTATCGGCTCTTGTGCCGCATGGGGTGGTGTTGCGGCAGCGGGCGATAACCCGACCGGCGCGGTGGGTCTTCAGGAAGTGCTGCCGGGCAAAACCATTATTAATATCCCGGGCTGCCCGCCGAATCCGCACAATTTCCTGGCAACGGTTGTGCACATTATTACCTACGGCACCGTACCGAAACTGGATAGCAAAAACCGTCCGCTTTTTGCCTACGGACGTTTGATCCACGAACATTGTGAGCGCCGCGCACATTTTGATGCCGGTCGTTTTGCCAAAGAGTTCGGCGACGAAGGTCACCGCGAAGGCTGGTGTCTCTATCACCTGGGCTGCAAAGGACCGGAAACCTACGGCAACTGCTCGACATTACAGTTTTGTGATGTCGGCGGCGTGTGGCCGGTGGCTATCGGGCATCCCTGCTATGGCTGTAACGAAGCCGGTGTCGGCTTCCATAAAGGTATCCATCAGCTTGCTTCTGTGCAGAACCCGACTCCGCGTGCGGAAAAACCGGATGTGGATCTGAAAGAGGGCGGCGTGGTTTCCGGTGGTGCCATCGGGTTGCTCGGCGGTGTTGTCGGGCTGGTTGCCGGTGTCAGTGTTATGGCGGTGCGTGAGCTGGGGCGTCAGCAAAAGAAAAATGATGCTGACTCGCCGCGGGGAGAGTAACTGTGAACAGGCGTGACTTTATTAAAGTAGCCTCCGGCGGGGCTTTGCTT