Homologs in group_703

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03030 FBDBKF_03030 96.9 Morganella morganii S1 doxX Uncharacterized membrane protein YphA, DoxX/SURF4 family
EHELCC_07505 EHELCC_07505 96.9 Morganella morganii S2 doxX Uncharacterized membrane protein YphA, DoxX/SURF4 family
NLDBIP_07830 NLDBIP_07830 96.9 Morganella morganii S4 doxX Uncharacterized membrane protein YphA, DoxX/SURF4 family
LHKJJB_07365 LHKJJB_07365 96.9 Morganella morganii S3 doxX Uncharacterized membrane protein YphA, DoxX/SURF4 family
HKOGLL_03565 HKOGLL_03565 96.9 Morganella morganii S5 doxX Uncharacterized membrane protein YphA, DoxX/SURF4 family
PMI_RS18390 PMI_RS18390 82.7 Proteus mirabilis HI4320 - DoxX family protein

Distribution of the homologs in the orthogroup group_703

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_703

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42619 6.65e-63 191 73 1 128 1 yqjF Inner membrane protein YqjF Escherichia coli (strain K12)
P0AD48 1.11e-18 79 40 3 123 3 yphA Inner membrane protein YphA Shigella flexneri
P0AD47 1.11e-18 79 40 3 123 1 yphA Inner membrane protein YphA Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11885
Feature type CDS
Gene -
Product DoxX family protein
Location 531438 - 531824 (strand: -1)
Length 387 (nucleotides) / 128 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_703
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF07681 DoxX

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2259 Function unknown (S) S Uncharacterized membrane protein YphA, DoxX/SURF4 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15977 putative oxidoreductase - -

Protein Sequence

MNNYAILIARIMMPVLFIVAGYGKLGDAYAGTQQYMQAMGVPGALLPLTILLELGGGLAILFGFLTRTTAVFTFGFTVLTALLFHTNFAEGANQLMFMKNFTIAGGFLLLAVTGPGKFSIDYLLKKKW

Flanking regions ( +/- flanking 50bp)

TGCCTGCAGATTTATAAATTCAATATTGTTGAGCTAATAAGGATCTCTCAATGAACAATTACGCTATTTTAATCGCACGTATCATGATGCCTGTTTTATTTATTGTGGCCGGATACGGAAAATTAGGTGATGCTTATGCCGGAACTCAGCAGTATATGCAGGCAATGGGTGTTCCCGGCGCGCTGCTGCCACTGACTATTCTGCTGGAACTCGGCGGCGGGCTGGCAATCTTGTTTGGTTTCTTAACCCGGACAACCGCTGTTTTCACTTTCGGGTTTACTGTGCTGACCGCGCTGCTGTTCCACACTAATTTTGCCGAAGGCGCTAACCAGTTAATGTTTATGAAAAACTTTACTATTGCAGGTGGTTTTCTCCTGCTGGCTGTCACCGGCCCCGGTAAATTCAGTATTGATTATTTATTAAAAAAGAAATGGTAATAACATTCAGGCAAAGCCACACAGCAAAATAATAAAATACCCTTATTCAT