Homologs in group_736

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03255 FBDBKF_03255 92.6 Morganella morganii S1 hpf ribosome hibernation promoting factor
EHELCC_07280 EHELCC_07280 92.6 Morganella morganii S2 hpf ribosome hibernation promoting factor
NLDBIP_07605 NLDBIP_07605 92.6 Morganella morganii S4 hpf ribosome hibernation promoting factor
LHKJJB_07140 LHKJJB_07140 92.6 Morganella morganii S3 hpf ribosome hibernation promoting factor
HKOGLL_03790 HKOGLL_03790 92.6 Morganella morganii S5 hpf ribosome hibernation promoting factor
PMI_RS18145 PMI_RS18145 69.5 Proteus mirabilis HI4320 hpf ribosome hibernation promoting factor

Distribution of the homologs in the orthogroup group_736

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_736

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26983 5.89e-40 130 62 0 95 3 hpf Ribosome hibernation promoting factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P17161 5.95e-40 130 61 0 95 3 hpf Ribosome hibernation promoting factor Klebsiella oxytoca
P0AFX3 4.38e-39 128 62 0 95 3 hpf Ribosome hibernation promoting factor Shigella flexneri
P0AFX0 4.38e-39 128 62 0 95 1 hpf Ribosome hibernation promoting factor Escherichia coli (strain K12)
P0AFX1 4.38e-39 128 62 0 95 3 hpf Ribosome hibernation promoting factor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFX2 4.38e-39 128 62 0 95 3 hpf Ribosome hibernation promoting factor Escherichia coli O157:H7
P17160 3.19e-27 98 51 0 91 3 hpf Ribosome hibernation promoting factor Azotobacter vinelandii
P0A148 9.97e-27 97 49 0 91 3 hpf Ribosome hibernation promoting factor Pseudomonas putida
P0A147 9.97e-27 97 49 0 91 3 hpf Ribosome hibernation promoting factor Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P33987 1.96e-15 68 39 2 100 3 hpf Ribosome hibernation promoting factor Acinetobacter guillouiae
P28613 2.18e-15 68 32 1 100 3 hpf Ribosome hibernation promoting factor Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q9RVE7 4.78e-12 62 36 1 93 1 hpf Ribosome hibernation promotion factor Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P47995 2.06e-11 60 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus carnosus (strain TM300)
Q5XAQ7 2.53e-11 59 35 3 96 1 hpf Ribosome hibernation promotion factor Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
A0A0H3GEZ8 1.16e-10 58 35 3 96 1 hpf Ribosome hibernation promotion factor Listeria monocytogenes serotype 1/2a (strain 10403S)
P74518 1.31e-10 58 32 2 100 3 hpf Ribosome hibernation promotion factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P0AD52 2.52e-10 55 35 1 95 3 yfiA Ribosome-associated factor Y Shigella flexneri
P0AD49 2.52e-10 55 35 1 95 1 raiA Ribosome-associated inhibitor A Escherichia coli (strain K12)
P0AD50 2.52e-10 55 35 1 95 3 yfiA Ribosome-associated factor Y Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AD51 2.52e-10 55 35 1 95 3 yfiA Ribosome-associated factor Y Escherichia coli O157:H7
Q8CTF2 2.65e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HQX7 2.65e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P28368 2.67e-10 57 38 4 96 1 yvyD Ribosome hibernation promotion factor Bacillus subtilis (strain 168)
Q5HHR8 3.31e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain COL)
Q7A1G5 3.41e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MW2)
Q6GB78 3.41e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MSSA476)
Q6GIN9 3.41e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MRSA252)
Q7A6R6 3.41e-10 57 32 1 95 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain N315)
Q99VM3 3.41e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2YSH7 3.41e-10 57 32 1 95 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G055 3.41e-10 57 32 1 95 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FIN9 3.41e-10 57 32 1 95 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain USA300)
P47908 5.97e-10 56 34 2 97 2 hpf Ribosome hibernation promotion factor Picosynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
A2RIX0 8.44e-10 55 35 3 96 1 hpf Ribosome hibernation promotion factor Lactococcus lactis subsp. cremoris (strain MG1363)
Q4L4H7 1.6e-09 55 35 3 100 3 hpf Ribosome hibernation promotion factor Staphylococcus haemolyticus (strain JCSC1435)
P24694 4.28e-09 51 30 1 78 3 hpf Ribosome hibernation promoting factor (Fragment) Acidithiobacillus ferridurans
Q49VV1 4.57e-09 53 32 1 92 3 hpf Ribosome hibernation promotion factor Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
P71346 8.08e-09 51 37 1 95 1 yfiA Ribosome-associated factor Y Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O05886 0.000303 41 30 1 100 1 hpf Ribosome hibernation promotion factor Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P30334 0.000328 40 26 2 96 3 hpf Ribosome hibernation promotion factor Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11665
Feature type CDS
Gene hpf
Product ribosome hibernation promoting factor
Location 484247 - 484534 (strand: -1)
Length 288 (nucleotides) / 95 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_736
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02482 Sigma 54 modulation protein / S30EA ribosomal protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1544 Translation, ribosomal structure and biogenesis (J) J Ribosome-associated translation inhibitor RaiA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05808 ribosome hibernation promoting factor - -

Protein Sequence

MELQITGHNVEITEALREIITSKCKKLEQFFDKINSVQVTLRIEKVSKIAEATAQVNGADLHASAEKDDMYAAIDEMAEKLGRQLSKHKEKLRNH

Flanking regions ( +/- flanking 50bp)

TCAAATCAGCGTAAGCAGCTGGTCTGATATTATTTGAGAAGGAAGACACTATGGAATTACAAATTACTGGCCACAACGTTGAAATTACAGAAGCATTACGTGAGATTATCACGTCGAAATGTAAAAAGTTGGAGCAGTTTTTCGATAAAATCAACAGCGTCCAGGTGACTCTGCGGATTGAGAAAGTCAGTAAAATTGCGGAGGCAACGGCTCAGGTAAACGGTGCGGATCTTCACGCGTCAGCGGAAAAAGATGATATGTATGCTGCAATTGATGAAATGGCTGAAAAGCTGGGTCGTCAGTTATCAAAACATAAAGAAAAACTGAGAAACCATTAACAATTCCTGTGTGTTTGAACATAAACAAGCGGGTATTTTAAATTTTCTCA