Homologs in group_740

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03275 FBDBKF_03275 81.6 Morganella morganii S1 rnk nucleoside diphosphate kinase regulator
EHELCC_07260 EHELCC_07260 81.6 Morganella morganii S2 rnk nucleoside diphosphate kinase regulator
NLDBIP_07585 NLDBIP_07585 81.6 Morganella morganii S4 rnk nucleoside diphosphate kinase regulator
LHKJJB_07120 LHKJJB_07120 81.6 Morganella morganii S3 rnk nucleoside diphosphate kinase regulator
HKOGLL_03810 HKOGLL_03810 81.6 Morganella morganii S5 rnk nucleoside diphosphate kinase regulator
PMI_RS18125 PMI_RS18125 77.2 Proteus mirabilis HI4320 rnk nucleoside diphosphate kinase regulator

Distribution of the homologs in the orthogroup group_740

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_740

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFW7 4.54e-54 169 61 0 133 3 rnk Regulator of nucleoside diphosphate kinase Shigella flexneri
P0AFW4 4.54e-54 169 61 0 133 1 rnk Regulator of nucleoside diphosphate kinase Escherichia coli (strain K12)
P0AFW5 4.54e-54 169 61 0 133 3 rnk Regulator of nucleoside diphosphate kinase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFW6 4.54e-54 169 61 0 133 3 rnk Regulator of nucleoside diphosphate kinase Escherichia coli O157:H7
Q7VJT9 9.35e-11 59 30 4 134 3 greA Transcription elongation factor GreA Helicobacter hepaticus (strain ATCC 51449 / 3B1)
A1VY10 2.03e-08 53 33 2 108 3 greA Transcription elongation factor GreA Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
Q5HWI0 4.76e-08 52 32 2 108 3 greA Transcription elongation factor GreA Campylobacter jejuni (strain RM1221)
Q9PIK9 4.76e-08 52 32 2 108 3 greA Transcription elongation factor GreA Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
A8FK75 4.76e-08 52 32 2 108 3 greA Transcription elongation factor GreA Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
B5YJG9 1.64e-07 50 32 0 79 3 greA Transcription elongation factor GreA Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
A7H585 2.94e-07 50 31 1 95 3 greA Transcription elongation factor GreA Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)
B2USW4 8.83e-07 48 31 1 87 3 greA Transcription elongation factor GreA Helicobacter pylori (strain Shi470)
P64275 1.6e-06 48 29 1 87 3 greA Transcription elongation factor GreA Helicobacter pylori (strain ATCC 700392 / 26695)
P64276 1.6e-06 48 29 1 87 3 greA Transcription elongation factor GreA Helicobacter pylori (strain J99 / ATCC 700824)
A6Q4L2 1.77e-06 48 30 4 110 3 greA Transcription elongation factor GreA Nitratiruptor sp. (strain SB155-2)
Q1CT06 2.65e-06 47 29 1 87 3 greA Transcription elongation factor GreA Helicobacter pylori (strain HPAG1)
B5Z7M6 2.65e-06 47 29 1 87 3 greA Transcription elongation factor GreA Helicobacter pylori (strain G27)
B6JM90 2.65e-06 47 29 1 87 3 greA Transcription elongation factor GreA Helicobacter pylori (strain P12)
Q3ATA7 3.49e-06 47 26 4 141 3 greA Transcription elongation factor GreA Chlorobium chlorochromatii (strain CaD3)
B2IHJ7 3.57e-06 47 26 1 96 3 greA Transcription elongation factor GreA Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712)
Q3A452 4.77e-06 46 25 1 92 3 greA Transcription elongation factor GreA Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1)
B9L822 5.67e-06 46 34 3 94 3 greA Transcription elongation factor GreA Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)
A3DJG6 8.66e-06 46 28 2 103 3 greA Transcription elongation factor GreA Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)
A1BHJ3 1.33e-05 45 29 3 117 3 greA Transcription elongation factor GreA Chlorobium phaeobacteroides (strain DSM 266 / SMG 266 / 2430)
B2GD90 1.61e-05 45 32 1 87 3 greA Transcription elongation factor GreA Limosilactobacillus fermentum (strain NBRC 3956 / LMG 18251)
A8ESG0 1.95e-05 45 27 3 98 3 greA Transcription elongation factor GreA Aliarcobacter butzleri (strain RM4018)
Q17WJ3 2.05e-05 45 28 1 94 3 greA Transcription elongation factor GreA Helicobacter acinonychis (strain Sheeba)
A4SFN0 3.29e-05 44 29 3 107 3 greA Transcription elongation factor GreA Chlorobium phaeovibrioides (strain DSM 265 / 1930)
B3EPH3 4.12e-05 44 29 2 94 3 greA Transcription elongation factor GreA Chlorobium phaeobacteroides (strain BS1)
B9KDP9 4.95e-05 43 28 2 107 3 greA Transcription elongation factor GreA Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060)
B3QJZ1 5.14e-05 43 27 0 84 3 greA Transcription elongation factor GreA Rhodopseudomonas palustris (strain TIE-1)
Q6N2H8 5.14e-05 43 27 0 84 3 greA Transcription elongation factor GreA Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Q0B0N4 5.81e-05 43 32 2 84 3 greA Transcription elongation factor GreA Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen)
Q8R7N0 6.49e-05 43 31 2 103 3 greA Transcription elongation factor GreA Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q6AL57 7.28e-05 43 27 1 91 3 greA Transcription elongation factor GreA Desulfotalea psychrophila (strain LSv54 / DSM 12343)
B4S9B2 8.13e-05 43 29 3 107 3 greA Transcription elongation factor GreA Prosthecochloris aestuarii (strain DSM 271 / SK 413)
A5ER96 0.000117 43 25 0 83 3 greA Transcription elongation factor GreA Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
B0K5B9 0.000198 42 32 1 93 3 greA Transcription elongation factor GreA Thermoanaerobacter sp. (strain X514)
B0KCE3 0.000198 42 32 1 93 3 greA Transcription elongation factor GreA Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)
B3QPT8 0.0002 42 31 1 83 3 greA Transcription elongation factor GreA Chlorobaculum parvum (strain DSM 263 / NCIMB 8327)
B9E6Y8 0.000273 42 30 2 86 3 greA Transcription elongation factor GreA Macrococcus caseolyticus (strain JCSC5402)
Q3SPT8 0.000299 42 25 0 86 3 greA Transcription elongation factor GreA Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255)
Q2RQB1 0.000324 41 30 2 83 3 greA Transcription elongation factor GreA Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
A6Q9U9 0.000373 41 26 1 96 3 greA Transcription elongation factor GreA Sulfurovum sp. (strain NBC37-1)
Q89DR1 0.000417 41 24 0 86 3 greA Transcription elongation factor GreA Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q8CSB3 0.000582 41 28 0 73 3 greA Transcription elongation factor GreA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNU0 0.000582 41 28 0 73 3 greA Transcription elongation factor GreA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q7M9N2 0.000675 40 28 3 100 3 greA Transcription elongation factor GreA Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
B3QV56 0.00069 40 31 1 94 3 greA Transcription elongation factor GreA Chloroherpeton thalassium (strain ATCC 35110 / GB-78)
Q2G656 0.000748 40 28 1 88 3 greA Transcription elongation factor GreA Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199)
Q8ZJH2 0.000874 40 30 2 86 3 greB Transcription elongation factor GreB Yersinia pestis
B4SBF9 0.000887 40 29 4 117 3 greA Transcription elongation factor GreA Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)
Q8EPT6 0.001 40 29 0 64 3 greA Transcription elongation factor GreA Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11645
Feature type CDS
Gene rnk
Product nucleoside diphosphate kinase regulator
Location 481858 - 482268 (strand: -1)
Length 411 (nucleotides) / 136 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_740
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01272 Transcription elongation factor, GreA/GreB, C-term
PF14760 Rnk N-terminus

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0782 Transcription (K) K Transcription elongation factor, GreA/GreB family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06140 regulator of nucleoside diphosphate kinase - -

Protein Sequence

MNKPNIIINELDAERLDKLLEQPAYADSAIAAALNDELDRADIVAPEDIPANVVTMNSRIRFIDLSNEKESIRTLVYPASLKDSAEQLSVMAPMGAALLGLSVGTEISWKMPNGDSARIKVLEIIYQPEAAGELHR

Flanking regions ( +/- flanking 50bp)

CTTCTGGTGTGGGGGTGTTCTTTTGTATTGGAAATGATTCGGAGTGTGGTATGAATAAACCCAACATAATTATCAATGAACTGGATGCAGAGCGTCTGGATAAGCTGCTGGAACAACCTGCTTACGCAGACAGCGCCATTGCGGCTGCATTAAACGACGAGTTAGATCGCGCAGACATTGTTGCGCCGGAAGACATTCCTGCCAATGTGGTCACGATGAACAGCCGTATCCGTTTTATCGACCTGTCGAATGAGAAAGAGAGCATCCGCACCCTGGTGTATCCTGCATCACTCAAAGACAGTGCGGAACAATTATCCGTTATGGCACCGATGGGCGCTGCGTTACTCGGCCTTTCTGTTGGTACAGAAATTTCATGGAAAATGCCGAACGGCGATTCTGCGCGCATCAAAGTATTAGAGATAATCTATCAGCCTGAAGCCGCCGGTGAATTACACCGCTAATCTGCTTTAGCCGACTCTGCGTCCGTTTTCTTTTTTACCTGCGGGCGCAG