Homologs in group_2606

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03470 FBDBKF_03470 92.0 Morganella morganii S1 livM ABC-type branched-chain amino acid transport system, permease component
EHELCC_07065 EHELCC_07065 92.0 Morganella morganii S2 livM ABC-type branched-chain amino acid transport system, permease component
NLDBIP_07390 NLDBIP_07390 92.0 Morganella morganii S4 livM ABC-type branched-chain amino acid transport system, permease component
LHKJJB_06925 LHKJJB_06925 92.0 Morganella morganii S3 livM ABC-type branched-chain amino acid transport system, permease component
HKOGLL_04005 HKOGLL_04005 92.0 Morganella morganii S5 livM ABC-type branched-chain amino acid transport system, permease component

Distribution of the homologs in the orthogroup group_2606

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2606

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30296 0.0 611 73 0 421 3 livM High-affinity branched-chain amino acid transport system permease protein LivM Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P22729 0.0 605 73 0 421 3 livM High-affinity branched-chain amino acid transport system permease protein LivM Escherichia coli (strain K12)
P21628 4.94e-150 435 58 3 412 3 braE High-affinity branched-chain amino acid transport system permease protein BraE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q58666 9.32e-14 75 24 12 354 3 livM Probable branched-chain amino acid transport permease protein LivM Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q7N2D8 0.000108 47 31 1 108 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBM2 0.0003 46 31 1 108 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
A4WER3 0.000309 46 30 2 114 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11425
Feature type CDS
Gene -
Product high-affinity branched-chain amino acid ABC transporter permease LivM
Location 428177 - 429460 (strand: 1)
Length 1284 (nucleotides) / 427 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2606
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component
PF11862 Domain of unknown function (DUF3382)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4177 Amino acid transport and metabolism (E) E ABC-type branched-chain amino acid transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01998 branched-chain amino acid transport system permease protein ABC transporters
Quorum sensing		 -

Protein Sequence

MTKSHWVNAIIATVTLFVLASVMMGLQLSLDGTQLVVRNADSIRWEWIGIGCVMVFVFQLVRPSLKQLTARLPKKNWLLPDFDGSTTSQKIIAGLIIVAAIIWPFIVSRGSVDIATLTLIYVMLGLGLNVVVGLSGLLVLGYAGFYAIGAYTYGLMNHYFGWGFWQSLPLAGIVAALSGLLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEFTGGPNGISQIPKPTLFGLEFGRTAKEGGWDTFHNFFGLAYDPGHRIIFLYLVALLLVIITLFIINRLLRMPMGRAWEALREDEIACRSLGLSPTRIKLTAFTISAAFAGIAGTLFAARQGFISPESFTFAESAFVLAVVVLGGMGSQTSVILAAVILVVSREMMRDLNAYSMLLLGALMVLMMVWRPQGLLPMSRPHLKIRTGSAEKTGGAQ

Flanking regions ( +/- flanking 50bp)

CTGCTGGTGATGCCGACCGGGATCTTAGGGCGTCCGGAGGTTGAGAAAGTATGACAAAATCTCACTGGGTAAACGCCATTATCGCCACTGTGACGCTGTTTGTTCTGGCCTCGGTCATGATGGGGCTGCAACTGTCACTCGACGGTACACAGCTTGTTGTGCGCAACGCTGACAGTATCCGCTGGGAGTGGATCGGCATTGGCTGTGTGATGGTCTTTGTTTTTCAACTGGTGCGTCCGTCACTGAAACAACTGACAGCACGTCTGCCGAAAAAAAATTGGCTGCTGCCGGATTTTGACGGCTCCACCACATCTCAAAAAATTATTGCCGGGCTGATTATTGTCGCCGCTATTATCTGGCCGTTTATTGTTTCACGCGGCAGTGTGGACATCGCTACCTTAACACTGATTTATGTGATGCTCGGCCTCGGGCTGAATGTGGTTGTCGGGCTGTCCGGGCTGCTGGTGCTGGGCTATGCGGGGTTTTATGCCATCGGCGCTTACACCTACGGGCTGATGAATCACTATTTCGGCTGGGGATTCTGGCAGAGCCTGCCGCTGGCAGGCATTGTTGCGGCACTCTCCGGATTGCTGCTCGGCTTCCCGGTGTTGCGGTTGCGGGGGGATTATCTGGCGATTGTCACTCTCGGATTCGGGGAAATTGTCCGTATTCTGCTGCTTAATAATACCGAATTTACCGGCGGGCCTAACGGGATCAGTCAGATCCCGAAACCCACTCTGTTCGGGCTGGAATTTGGCAGAACCGCCAAAGAGGGCGGTTGGGATACTTTTCATAATTTCTTTGGTCTGGCGTATGACCCGGGTCACCGCATTATTTTCCTCTATCTGGTCGCGCTGCTGCTGGTTATTATCACCTTGTTTATTATTAACAGGTTACTGCGCATGCCGATGGGACGTGCCTGGGAAGCACTGCGCGAAGATGAAATTGCCTGCCGCTCTTTAGGGTTAAGTCCGACACGCATTAAACTGACGGCGTTCACTATCAGTGCTGCCTTTGCCGGTATTGCCGGAACCTTGTTTGCTGCACGTCAGGGATTTATCAGCCCTGAATCCTTCACCTTTGCTGAATCAGCCTTTGTGCTGGCAGTTGTGGTGCTGGGCGGCATGGGATCACAAACCTCCGTTATCCTTGCAGCCGTGATCCTCGTCGTTTCCCGTGAAATGATGCGGGATCTTAACGCCTACAGCATGTTACTGCTTGGCGCACTGATGGTACTGATGATGGTCTGGCGTCCGCAGGGATTACTGCCGATGTCACGTCCGCACCTGAAAATTCGCACCGGCTCCGCTGAAAAAACCGGAGGTGCGCAATGACAGACACATTATTGCAGGTATCAGACCTGACGATGCGCTTCGGCGGATTA