Homologs in group_2611

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03505 FBDBKF_03505 90.3 Morganella morganii S1 cdaR Sugar diacid utilization regulator CdaR
EHELCC_07030 EHELCC_07030 90.3 Morganella morganii S2 cdaR Sugar diacid utilization regulator CdaR
NLDBIP_07355 NLDBIP_07355 90.3 Morganella morganii S4 cdaR Sugar diacid utilization regulator CdaR
LHKJJB_06890 LHKJJB_06890 90.3 Morganella morganii S3 cdaR Sugar diacid utilization regulator CdaR
HKOGLL_04040 HKOGLL_04040 90.3 Morganella morganii S5 cdaR Sugar diacid utilization regulator CdaR

Distribution of the homologs in the orthogroup group_2611

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2611

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44509 3.83e-80 253 39 4 373 3 HI_0093 Uncharacterized protein HI_0093 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37047 1.11e-70 229 35 2 379 1 cdaR Carbohydrate diacid regulator Escherichia coli (strain K12)
P94536 1.38e-36 139 28 9 378 3 ysfB Uncharacterized protein YsfB Bacillus subtilis (strain 168)
P71073 5.79e-07 54 20 4 222 1 adeR DNA-binding transcriptional activator AdeR Bacillus subtilis (strain 168)
O32138 3.94e-05 49 39 0 53 2 pucR Purine catabolism regulatory protein Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11395
Feature type CDS
Gene -
Product sugar diacid recognition domain-containing protein
Location 420804 - 421928 (strand: 1)
Length 1125 (nucleotides) / 374 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2611
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF05651 Putative sugar diacid recognition
PF13556 PucR C-terminal helix-turn-helix domain
PF17853 GGDEF-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3835 Transcription (K)
Signal transduction mechanisms (T)		 KT Sugar diacid utilization regulator CdaR

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02647 carbohydrate diacid regulator - -

Protein Sequence

MTPARLDQRTARLIVQRTMQILSYSVNVMNAEGVIIASGDPQRVNQRHEGAVLALTENRIVEIDEATAATLKGVKPGINLPVIFRDSMVGVVGISGKPDEVRNYAELVRMAAELVLEQVDLLEKSQWDRRYRDELVSQLISPEQQPQSVNSIAAYLGISPDKPRVALILSLPAPDHEQFHQLVEYIDNLKMDLLVSIRGINSLVVLKPVTCDENFQLVSPLRKQLQALRRQLPSSPELLMYVGGFFHANNGLHRSWQSACAVQQLGLTPAYEQKTIFYDEVKLPALLQGFRDSWEAAELTSAWQQLKAADTRKVLCHTLKTYFDQNCDLSQTTKMLHIHTNTLRYRLTRVESITGLNINKLESIMQLYFGILTE

Flanking regions ( +/- flanking 50bp)

CATTGAATCTGCTATTGCGGCGGCAAAACTGACACACGTAAAATCCTGATATGACCCCGGCCCGGCTTGACCAGCGAACCGCGCGGCTGATTGTTCAGCGGACTATGCAAATCCTCAGTTATTCTGTGAATGTGATGAATGCAGAGGGTGTGATTATTGCTTCCGGTGATCCGCAGCGGGTCAACCAGCGCCATGAAGGTGCTGTGCTGGCACTGACGGAAAACCGGATTGTTGAGATCGATGAGGCAACGGCAGCGACGCTGAAAGGGGTAAAACCGGGGATTAATCTGCCGGTTATTTTCCGCGACAGCATGGTCGGTGTGGTCGGGATCTCCGGTAAGCCGGATGAGGTGCGCAACTATGCCGAACTGGTGCGCATGGCCGCCGAACTGGTTCTTGAGCAGGTTGATTTACTTGAAAAATCACAGTGGGACAGGCGTTATCGTGATGAACTTGTCAGTCAACTGATAAGCCCGGAGCAGCAGCCGCAGTCCGTTAACTCTATCGCCGCTTATCTCGGGATCTCCCCTGACAAACCCCGTGTTGCGCTGATCCTCTCTCTGCCTGCGCCGGATCATGAGCAATTTCATCAGTTAGTCGAATACATTGATAATCTGAAAATGGATCTTCTGGTCAGTATTCGTGGCATCAATTCTCTTGTTGTCCTCAAACCTGTCACATGTGATGAGAATTTCCAGCTGGTTTCGCCGTTGCGCAAACAGTTACAGGCATTACGGCGGCAGCTACCCTCTTCGCCTGAATTGCTGATGTATGTCGGTGGTTTTTTTCATGCAAATAACGGATTGCACCGGTCATGGCAGAGCGCCTGCGCGGTACAACAGCTCGGGCTGACCCCGGCGTATGAACAGAAAACGATTTTTTATGATGAGGTTAAGCTGCCTGCATTATTGCAGGGATTCCGTGATAGCTGGGAAGCGGCGGAACTGACCTCGGCATGGCAGCAACTGAAGGCGGCAGACACCAGAAAGGTGTTATGCCACACACTGAAGACCTATTTTGATCAGAATTGTGATCTGTCTCAAACTACAAAAATGCTGCATATTCATACAAATACGCTGCGCTATCGCCTCACGCGTGTTGAATCGATTACTGGCTTAAATATCAATAAATTAGAATCAATTATGCAGCTGTATTTCGGGATACTCACCGAATAGTCTTTTGTGGCATCCTACAATTTACGCCATTCCGGCTACCCGTTTTTTGT