Homologs in group_789

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03700 FBDBKF_03700 93.1 Morganella morganii S1 hycH Formate hydrogenlyase maturation protein HycH
EHELCC_06835 EHELCC_06835 93.1 Morganella morganii S2 hycH Formate hydrogenlyase maturation protein HycH
NLDBIP_07160 NLDBIP_07160 93.1 Morganella morganii S4 hycH Formate hydrogenlyase maturation protein HycH
LHKJJB_06695 LHKJJB_06695 93.1 Morganella morganii S3 hycH Formate hydrogenlyase maturation protein HycH
HKOGLL_04235 HKOGLL_04235 93.1 Morganella morganii S5 hycH Formate hydrogenlyase maturation protein HycH
PMI_RS12455 PMI_RS12455 73.5 Proteus mirabilis HI4320 - formate hydrogenlyase maturation HycH family protein

Distribution of the homologs in the orthogroup group_789

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_789

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77453 9.72e-48 153 53 0 130 4 hyfJ Hydrogenase-4 component J Escherichia coli (strain K12)
P0AEV7 2.05e-41 137 51 1 130 4 hycH Formate hydrogenlyase maturation protein HycH Escherichia coli (strain K12)
P0AEV8 2.05e-41 137 51 1 130 3 hycH Formate hydrogenlyase maturation protein HycH Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11170
Feature type CDS
Gene -
Product formate hydrogenlyase maturation HycH family protein
Location 374332 - 374766 (strand: 1)
Length 435 (nucleotides) / 144 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_789
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07450 Formate hydrogenlyase maturation protein HycH

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12145 hydrogenase-4 component J [EC:1.-.-.-] - -

Protein Sequence

MPEQTPNHADTDGKVIFWSLRQKFVDTDDDVPEEAQQVMYYSLAIGHHVGMIDCLNTELTCPLSGYQSWVHALPEGEARRKLQGLITFGEINIDASHTNMLALALDPLLKDQNPDFREWSATLIRLLGEIEREPAIYLIVKRRP

Flanking regions ( +/- flanking 50bp)

GCGCGAGATAGTGAATCGTCTGGTGACCGTATTACAACAAGGAGGCATTCATGCCTGAACAGACACCCAATCACGCGGACACTGACGGAAAAGTCATCTTCTGGTCGCTGAGACAAAAATTTGTCGACACAGATGATGATGTTCCTGAAGAGGCTCAGCAGGTGATGTATTACTCACTGGCAATCGGCCATCATGTTGGCATGATTGATTGTCTGAACACAGAGCTGACCTGCCCGCTGAGTGGTTATCAATCCTGGGTTCATGCGCTTCCCGAAGGGGAGGCGCGCCGTAAACTTCAGGGATTGATAACCTTCGGTGAAATCAATATTGATGCTTCGCACACCAATATGCTGGCGCTGGCACTTGATCCGCTGTTGAAAGATCAAAACCCGGACTTTCGTGAATGGAGCGCCACGCTTATCCGCCTGTTAGGGGAAATTGAGCGCGAACCGGCTATTTACCTGATAGTGAAGCGACGCCCATGAGTGAAATAACCGCAAAAAACGTCATGCTGGCTGTCGGAAACAGCATGATG