Homologs in group_2802

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09155 FBDBKF_09155 95.0 Morganella morganii S1 hdc histidine decarboxylase
EHELCC_10255 EHELCC_10255 95.0 Morganella morganii S2 hdc histidine decarboxylase
NLDBIP_10600 NLDBIP_10600 95.0 Morganella morganii S4 hdc histidine decarboxylase
LHKJJB_10755 LHKJJB_10755 95.0 Morganella morganii S3 hdc histidine decarboxylase
HKOGLL_13815 HKOGLL_13815 95.0 Morganella morganii S5 hdc histidine decarboxylase

Distribution of the homologs in the orthogroup group_2802

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2802

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P05034 0.0 758 94 0 378 1 hdc Histidine decarboxylase Morganella morganii
P28578 0.0 688 84 0 378 3 hdc Histidine decarboxylase Raoultella planticola
P28577 0.0 663 82 0 378 3 hdc Histidine decarboxylase Klebsiella aerogenes
Q1IAK7 0.0 611 75 0 372 3 hdc Histidine decarboxylase Pseudomonas entomophila (strain L48)
P95477 0.0 605 75 1 376 3 hdc Histidine decarboxylase Pseudomonas fluorescens
B2HVG6 0.0 582 71 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ACICU)
A3M7A4 0.0 581 71 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
B0VBU8 0.0 578 71 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AYE)
B7I459 0.0 578 71 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AB0057)
B7GZJ8 0.0 578 71 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AB307-0294)
A7MVI6 0.0 533 64 0 372 3 hdc Histidine decarboxylase Vibrio campbellii (strain ATCC BAA-1116)
Q56581 0.0 515 61 0 372 3 hdc Histidine decarboxylase Vibrio anguillarum (strain ATCC 68554 / 775)
Q8L0Z4 2.36e-141 404 83 0 228 3 hdc Histidine decarboxylase (Fragment) Raoultella ornithinolytica
Q98A07 1.6e-99 302 42 3 367 3 hdc Histidine decarboxylase Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
Q9MA74 1.62e-89 280 40 3 350 1 SDC Serine decarboxylase Arabidopsis thaliana
Q8RV06 1.48e-86 272 41 2 330 2 Os10g0105700 Serine decarboxylase 2 Oryza sativa subsp. japonica
Q6ESZ9 2.49e-86 272 39 4 351 3 SDC1 Serine decarboxylase 1 Oryza sativa subsp. japonica
Q7X8D4 3.32e-86 271 39 4 333 3 LOC_Os04g04640 Serine decarboxylase 3 Oryza sativa subsp. japonica
P54772 3.68e-80 254 39 7 355 2 HDC Histidine decarboxylase Solanum lycopersicum
Q2NHY7 1.58e-29 120 29 10 286 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)
Q9UZD5 4.5e-26 110 29 10 293 3 mfnA Probable L-aspartate decarboxylase Pyrococcus abyssi (strain GE5 / Orsay)
O58679 1.37e-25 109 28 10 292 1 mfnA L-aspartate/L-glutamate decarboxylase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8U1P6 1.34e-23 103 28 9 290 3 mfnA Probable L-aspartate decarboxylase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
J7SZ64 1.51e-22 101 24 8 335 1 CLOSPO_02083 Tryptophan decarboxylase Clostridium sporogenes (strain ATCC 15579)
Q5JJ82 6.66e-22 99 28 9 281 1 mfnA L-aspartate decarboxylase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
C5A2X8 1.9e-21 98 26 11 342 3 mfnA Probable L-aspartate decarboxylase Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
A0B9M9 1.93e-21 97 26 9 277 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT)
A5ULW4 4.04e-20 94 27 10 307 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS)
B8GDM7 4.56e-20 94 28 9 238 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
A2STQ3 9.25e-20 92 24 9 277 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
A7IAB9 2.22e-19 91 27 9 236 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
O28275 4.31e-19 90 26 9 278 3 mfnA Probable L-aspartate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O27188 1.54e-18 89 26 10 277 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q8TV92 3.62e-18 88 27 13 307 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q8TUQ9 2.34e-17 86 24 12 331 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q46DU3 7.93e-17 84 23 11 319 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina barkeri (strain Fusaro / DSM 804)
Q8PXA5 1.65e-16 84 22 11 330 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q12VA2 1.99e-16 83 24 11 342 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Q2FSD2 3.47e-15 79 28 9 235 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
Q0W498 1.98e-14 77 28 10 222 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
A6UVR4 3.36e-14 77 25 9 290 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
Q5V1B4 4.43e-14 76 28 9 234 3 mfnA Probable L-aspartate decarboxylase Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
A3CWM4 8.34e-14 75 25 9 235 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Q60358 2.98e-13 73 24 7 250 1 mfnA L-tyrosine/L-aspartate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q6M0Y7 7.03e-12 69 22 10 349 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
A4G060 1.13e-11 69 22 12 351 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
Q3IT46 1.79e-11 68 25 9 234 3 mfnA Probable L-aspartate decarboxylase Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
A6VIC0 2.83e-11 67 22 11 350 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
A6URB4 3.07e-11 67 21 10 344 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
Q9Y194 1.05e-10 66 24 10 268 1 spl-1 Sphingosine-1-phosphate lyase Caenorhabditis elegans
Q80WP8 1.26e-10 66 26 8 258 1 Gadl1 Acidic amino acid decarboxylase GADL1 Mus musculus
Q9Y600 1.51e-10 66 23 14 367 1 CSAD Cysteine sulfinic acid decarboxylase Homo sapiens
Q9HSA3 8.76e-10 63 24 10 235 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R349 8.76e-10 63 24 10 235 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
Q5E6F9 2.32e-09 62 25 9 267 1 panP Aspartate 1-decarboxylase Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q9Z3R1 3.46e-09 62 25 7 219 3 rhbB L-2,4-diaminobutyrate decarboxylase Rhizobium meliloti (strain 1021)
P20228 3.54e-09 62 24 10 254 1 Gad1 Glutamate decarboxylase Drosophila melanogaster
Q4PRC2 6.41e-09 61 23 9 249 2 GAD2 Glutamate decarboxylase 2 Canis lupus familiaris
P48321 6.7e-09 61 23 9 249 2 GAD2 Glutamate decarboxylase 2 Sus scrofa
Q9DBE0 7.29e-09 60 24 10 278 1 Csad Cysteine sulfinic acid decarboxylase Mus musculus
P48319 8.07e-09 60 23 11 319 2 GAD1 Glutamate decarboxylase 1 Sus scrofa
P48320 1.17e-08 60 23 9 249 1 Gad2 Glutamate decarboxylase 2 Mus musculus
P18088 1.23e-08 60 22 11 319 1 Gad1 Glutamate decarboxylase 1 Rattus norvegicus
A0PA85 1.3e-08 60 22 11 319 2 GAD1 Glutamate decarboxylase 1 Canis lupus familiaris
Q05329 1.38e-08 60 23 9 249 1 GAD2 Glutamate decarboxylase 2 Homo sapiens
P14748 1.4e-08 60 22 11 319 2 GAD1 Glutamate decarboxylase 1 Felis catus
Q05683 1.67e-08 60 23 9 249 1 Gad2 Glutamate decarboxylase 2 Rattus norvegicus
Q64611 2.42e-08 59 24 10 278 1 Csad Cysteine sulfinic acid decarboxylase Rattus norvegicus
P48318 2.74e-08 59 22 11 316 1 Gad1 Glutamate decarboxylase 1 Mus musculus
Q99259 3.58e-08 58 22 11 319 1 GAD1 Glutamate decarboxylase 1 Homo sapiens
Q0VCA1 3.81e-08 58 22 12 319 2 GAD1 Glutamate decarboxylase 1 Bos taurus
Q5R7S7 4.79e-08 58 22 11 319 2 GAD1 Glutamate decarboxylase 1 Pongo abelii
P71362 5.01e-08 58 29 9 218 1 ddc L-2,4-diaminobutyrate decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5IS68 5.19e-08 58 22 11 319 2 GAD1 Glutamate decarboxylase 1 Pan troglodytes
I1RV23 6.33e-08 58 25 8 201 2 FG08083 Glutamate decarboxylase-like protein FG08083 Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1)
A7B1V0 7.46e-08 57 28 7 195 1 RUMGNA_01526 Tryptophan decarboxylase Mediterraneibacter gnavus (strain ATCC 29149 / DSM 114966 / JCM 6515 / VPI C7-9)
A0A0A2IDH4 1.64e-07 56 26 10 215 1 cnsB L-tryptophan decarboxylase cnsB Penicillium expansum
A0A2I6B3P0 2.24e-07 56 24 7 210 1 4HPAAS 4-hydroxyphenylacetaldehyde synthase Rhodiola rosea
I0DFJ0 7.38e-07 54 25 8 196 1 None Aromatic-L-amino-acid decarboxylase Bacillus atrophaeus
Q0ZQX0 8.11e-07 54 24 11 283 1 PAAS Phenylacetaldehyde synthase Petunia hybrida
A0A2H5AIY2 0.000113 47 21 11 276 2 TYDC2 Tyrosine decarboxylase 2 Narcissus pseudonarcissus
E9FCP7 0.000219 47 24 7 196 3 dtxS4 L-aspartate decarboxylase dtxS4 Metarhizium robertsii (strain ARSEF 23 / ATCC MYA-3075)
A6UUU3 0.000752 45 22 9 271 3 Maeo_0681 O-phospho-L-seryl-tRNA:Cys-tRNA synthase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
P54771 0.001 44 23 8 227 2 TYDC5 Tyrosine/DOPA decarboxylase 5 Papaver somniferum

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10795
Feature type CDS
Gene -
Product histidine decarboxylase
Location 291537 - 292673 (strand: -1)
Length 1137 (nucleotides) / 378 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2802
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00282 Pyridoxal-dependent decarboxylase conserved domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0076 Amino acid transport and metabolism (E) E Glutamate or tyrosine decarboxylase or a related PLP-dependent protein

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG044234 histidine decarboxylase VF0936 Nutritional/Metabolic factor

Protein Sequence

MTLSINDQNKLDAFWAYCVKNQYFNIGYPESADFNYTNLERFLRFSINNCGDWGEYCNYLLNSFDFEKEVMEYFADLFKIPFEQSWGYVTNGGTEGNMFGCYLGREIFPDGTLYYSKDTHYSVAKIVKLLRIKSQVVEAQPNGEIDYDDLMKKIADDKEAHPIIFANIGTTVRGAIDDIAEIQKRMKAAGIKREDYYLHADAALSGMILPFVDEPQAFTFADGIDSIGVSGHKMIGTPIPCGIVVAKKENVDRISVEIDYISAHDKTITGSRNGHTPLMLWEAVRAHSTEDWKRRIGRSLDMAQYAVDRLQKAGINAWRNKNSITVVFPCPSERVWKEHCLATSGNDAHLITTAHHLDTAQIDALIDDVIADAKLHAA

Flanking regions ( +/- flanking 50bp)

CCACAGCGGTTTACAGTCTTTATATTTTGAAAAACAAGAGGTAAATAATTATGACTCTGTCTATCAATGATCAAAACAAACTCGATGCATTCTGGGCATATTGCGTAAAAAACCAGTATTTCAACATCGGTTATCCTGAATCTGCGGATTTTAATTACACCAATCTGGAACGCTTCTTACGTTTCTCCATCAACAACTGTGGTGACTGGGGCGAGTATTGCAACTACCTGCTGAACTCTTTCGATTTTGAAAAAGAAGTGATGGAGTATTTCGCAGACCTGTTCAAGATTCCGTTTGAACAAAGCTGGGGTTATGTCACTAACGGCGGGACCGAAGGTAATATGTTCGGTTGCTACCTGGGCCGTGAAATCTTCCCTGACGGTACGCTCTACTATTCAAAAGATACCCACTACTCTGTAGCGAAAATCGTCAAATTACTGCGCATCAAATCACAGGTTGTTGAAGCTCAGCCAAACGGCGAAATCGACTATGACGATCTGATGAAGAAAATTGCGGATGATAAAGAAGCGCATCCGATTATTTTCGCTAACATCGGGACAACCGTCCGTGGTGCGATTGATGATATCGCAGAGATCCAGAAACGCATGAAAGCAGCCGGTATCAAACGTGAAGATTACTATCTGCACGCTGATGCGGCACTGAGCGGCATGATCCTGCCATTTGTTGATGAACCACAGGCATTTACCTTTGCTGATGGTATCGATTCAATTGGTGTTTCCGGCCACAAAATGATTGGTACGCCAATCCCTTGCGGTATTGTTGTTGCGAAAAAAGAGAATGTTGACCGTATTTCCGTCGAAATCGATTACATCTCCGCACACGATAAAACCATCACCGGTTCCCGTAATGGTCATACACCACTGATGTTATGGGAAGCTGTCCGCGCACATTCAACCGAAGACTGGAAACGCCGCATCGGCCGCAGCCTGGATATGGCGCAGTACGCCGTTGATCGTCTGCAGAAAGCCGGTATCAATGCATGGCGCAACAAGAACTCCATCACCGTCGTCTTCCCTTGCCCGTCTGAACGGGTCTGGAAAGAGCATTGCCTCGCGACTTCCGGTAATGACGCTCACCTGATCACCACCGCTCACCATCTGGACACCGCTCAGATTGATGCGCTGATCGATGACGTTATCGCCGACGCAAAATTACACGCGGCATAAAAAAAGGCAGTGGTAATTATCCACTGCCCCCTTACCGTTCGTTGCCGGCG