Homologs in group_2813

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09450 FBDBKF_09450 56.9 Morganella morganii S1 tPR TPR repeat
EHELCC_09960 EHELCC_09960 56.9 Morganella morganii S2 tPR TPR repeat
NLDBIP_10305 NLDBIP_10305 56.9 Morganella morganii S4 tPR TPR repeat
LHKJJB_11050 LHKJJB_11050 56.9 Morganella morganii S3 tPR TPR repeat
HKOGLL_14110 HKOGLL_14110 56.9 Morganella morganii S5 tPR TPR repeat

Distribution of the homologs in the orthogroup group_2813

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2813

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10530
Feature type CDS
Gene -
Product sel1 repeat family protein
Location 237577 - 237906 (strand: 1)
Length 330 (nucleotides) / 109 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2813
Orthogroup size 6
N. genomes 6

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0790 General function prediction only (R) R TPR repeat

Protein Sequence

MKNYSLVCLVLLFISFFSFANNTQYDIYLLSQKAGQGDADAQFLLGSIYLSGDYGVRKDIDKGKYYLLVAAGKGDSDAKRFLAYQFYKEHEFYIFIHWLSYYSLDFIRE

Flanking regions ( +/- flanking 50bp)

ATAAAGAAATAGGGTTCGATGCTATTTTAAGCAACAGGGATGATATAACTGTGAAAAATTATTCTTTAGTTTGTTTAGTATTGTTATTTATATCTTTTTTTTCTTTTGCAAATAACACACAGTACGATATTTATTTGCTCAGCCAAAAAGCCGGACAAGGAGATGCCGATGCCCAGTTTTTACTTGGTTCAATCTATCTTTCCGGGGACTATGGTGTAAGAAAAGATATTGATAAAGGTAAATATTATTTATTGGTGGCGGCAGGTAAAGGGGATTCAGATGCTAAACGCTTTCTGGCATATCAGTTTTATAAAGAACATGAGTTTTATATCTTTATTCACTGGTTATCCTATTACAGCCTTGATTTCATCAGAGAGTAAGTAATATATTATTTTTCTCAACCGGCTTGTGACTCTCACAAGCCTTTTTT