Homologs in group_1472

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09455 FBDBKF_09455 53.8 Morganella morganii S1 ccmA Cytoskeletal protein CcmA, bactofilin family
EHELCC_09955 EHELCC_09955 53.8 Morganella morganii S2 ccmA Cytoskeletal protein CcmA, bactofilin family
NLDBIP_10300 NLDBIP_10300 53.8 Morganella morganii S4 ccmA Cytoskeletal protein CcmA, bactofilin family
LHKJJB_11055 LHKJJB_11055 53.8 Morganella morganii S3 ccmA Cytoskeletal protein CcmA, bactofilin family
HKOGLL_14115 HKOGLL_14115 53.8 Morganella morganii S5 ccmA Cytoskeletal protein CcmA, bactofilin family
PMI_RS09665 PMI_RS09665 35.4 Proteus mirabilis HI4320 - polymer-forming cytoskeletal protein

Distribution of the homologs in the orthogroup group_1472

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1472

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10525
Feature type CDS
Gene -
Product polymer-forming cytoskeletal protein
Location 237029 - 237538 (strand: 1)
Length 510 (nucleotides) / 169 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1472
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04519 Polymer-forming cytoskeletal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1664 Cytoskeleton (Z) Z Cytoskeletal protein CcmA, bactofilin family

Protein Sequence

MALFKKNNEITREDKIAKTDAADKENVINTADKVVKKVTIIGADCVIQGDIKLDGNIEVYGQIKGNVTSGTFKVSVMDNGSIEGDVIAEHVSINGRLAGVCHARNIEILQKGVLNGVCRAEVFSINTGGVFVGQSEPYVKKVNDLNKEKKSHQDINPVGENNEIKIIKK

Flanking regions ( +/- flanking 50bp)

CTTCATTTTTATTTATGCTGTACTTCACGACGACAGGACAAAAAAAACTCATGGCATTATTCAAAAAAAATAACGAAATCACACGGGAAGATAAAATCGCTAAGACAGACGCTGCAGATAAAGAGAATGTAATAAATACTGCAGATAAAGTCGTTAAGAAAGTAACCATTATTGGTGCAGACTGTGTCATACAAGGTGATATTAAACTCGATGGAAATATTGAAGTATACGGGCAGATAAAAGGAAATGTGACATCCGGAACATTTAAGGTATCAGTGATGGATAATGGCAGTATTGAAGGCGATGTTATTGCTGAGCATGTTTCAATCAATGGCCGGTTAGCCGGTGTATGTCACGCAAGGAATATTGAAATATTACAAAAAGGTGTGCTTAATGGTGTCTGCCGGGCTGAAGTATTTTCAATTAATACCGGAGGTGTTTTTGTCGGACAGTCAGAACCCTATGTGAAAAAGGTAAACGATTTGAATAAAGAAAAGAAATCCCACCAGGACATTAATCCTGTGGGCGAAAATAATGAGATAAAAATTATAAAGAAATAGGGTTCGATGCTATTTTAAGCAACAGGGATGATATAACTGTGAAAAATTAT