COG1664


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1664, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Cytoskeletal protein CcmA, bactofilin family
Function(s) descr. Cytoskeleton (Z)

Occurence in the database

COG1664 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1472 FBDBKF_09455 119559 120029 -1 ccmA Cytoskeletal protein CcmA, bactofilin family Morganella morganii S1
1 group_2861 FBDBKF_10960 17324 18037 1 Polymer-forming cytoskeletal protein Morganella morganii S1
2 group_2861 EHELCC_05265 41431 42144 -1 Polymer-forming cytoskeletal protein Morganella morganii S2
3 group_1472 EHELCC_09955 26075 26545 1 ccmA Cytoskeletal protein CcmA, bactofilin family Morganella morganii S2
4 group_2861 NLDBIP_05585 82496 83209 -1 Polymer-forming cytoskeletal protein Morganella morganii S4
5 group_1472 NLDBIP_10300 4346 4816 1 ccmA Cytoskeletal protein CcmA, bactofilin family Morganella morganii S4
6 group_2861 LHKJJB_02465 60020 60733 -1 Polymer-forming cytoskeletal protein Morganella morganii S3
7 group_1472 LHKJJB_11055 186712 187182 -1 ccmA Cytoskeletal protein CcmA, bactofilin family Morganella morganii S3
8 group_1472 HKOGLL_14115 120013 120483 -1 ccmA Cytoskeletal protein CcmA, bactofilin family Morganella morganii S5
9 group_2861 HKOGLL_15845 83460 84173 -1 Polymer-forming cytoskeletal protein Morganella morganii S5
10 group_2861 F4V73_RS08265 1715219 1715944 -1 polymer-forming cytoskeletal protein Morganella psychrotolerans
11 group_1472 F4V73_RS10525 237029 237538 1 polymer-forming cytoskeletal protein Morganella psychrotolerans
12 group_1472 PMI_RS09665 2107785 2108297 -1 polymer-forming cytoskeletal protein Proteus mirabilis HI4320