Homologs in group_1430

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08835 FBDBKF_08835 95.3 Morganella morganii S1 holC DNA polymerase III, chi subunit
EHELCC_12690 EHELCC_12690 95.3 Morganella morganii S2 holC DNA polymerase III, chi subunit
NLDBIP_13030 NLDBIP_13030 95.3 Morganella morganii S4 holC DNA polymerase III, chi subunit
LHKJJB_13525 LHKJJB_13525 95.3 Morganella morganii S3 holC DNA polymerase III, chi subunit
HKOGLL_11505 HKOGLL_11505 95.3 Morganella morganii S5 holC DNA polymerase III, chi subunit
PMI_RS17260 PMI_RS17260 83.2 Proteus mirabilis HI4320 - DNA polymerase III subunit chi

Distribution of the homologs in the orthogroup group_1430

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1430

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28905 9.2e-66 199 64 0 145 1 holC DNA polymerase III subunit chi Escherichia coli (strain K12)
P43749 8.37e-40 134 46 1 141 3 holC DNA polymerase III subunit chi Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O68823 6.21e-19 80 35 3 141 3 holC DNA polymerase III subunit chi Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10055
Feature type CDS
Gene -
Product DNA polymerase III subunit chi
Location 118405 - 118854 (strand: -1)
Length 450 (nucleotides) / 149 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1430
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04364 DNA polymerase III chi subunit, HolC

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2927 Replication, recombination and repair (L) L DNA polymerase III, chi subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02339 DNA polymerase III subunit chi [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MKNATFYQMEQPSPFDDLEAHEWLTCQLAGEAWRNGKRVLIACESQQQAEKLDEALWAREPDAFVPHNLAGEGPRYGAPVELCWPQKRGNSPRDLLITLLPQFTDFATTFREVIDFVPIDEQLKQLARERYKIYRSVGFTLTMATPPTY

Flanking regions ( +/- flanking 50bp)

GGGGATTGTGATATTATTGTGCAATCCCCTTTTCTGCTATCAGAGATATTATGAAAAACGCCACCTTCTATCAGATGGAACAGCCATCCCCCTTTGATGACCTTGAAGCCCACGAGTGGCTGACGTGTCAGTTGGCGGGAGAGGCATGGCGCAACGGGAAACGGGTACTTATCGCCTGTGAATCGCAACAGCAGGCTGAAAAACTCGACGAAGCCCTCTGGGCGCGCGAACCAGATGCGTTTGTTCCCCATAATTTAGCAGGTGAAGGGCCGCGTTATGGTGCGCCTGTTGAACTGTGCTGGCCGCAGAAGCGCGGAAATTCGCCGCGTGATTTACTGATTACATTACTGCCGCAGTTCACAGATTTTGCGACAACCTTCCGTGAAGTGATAGACTTTGTGCCTATCGACGAACAATTGAAACAGTTGGCGCGCGAGCGATATAAAATCTATCGCAGCGTCGGCTTTACCCTAACAATGGCCACGCCGCCAACTTACTGATAAACAAAGATTAAAAATGGAAAAAACAACCGACAGCCAACAGACCAACG