Homologs in group_1411

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08720 FBDBKF_08720 92.6 Morganella morganii S1 lytS Sensor histidine kinase, LytS/YehU family
EHELCC_12805 EHELCC_12805 92.6 Morganella morganii S2 lytS Sensor histidine kinase, LytS/YehU family
NLDBIP_13145 NLDBIP_13145 92.6 Morganella morganii S4 lytS Sensor histidine kinase, LytS/YehU family
LHKJJB_13410 LHKJJB_13410 92.6 Morganella morganii S3 lytS Sensor histidine kinase, LytS/YehU family
HKOGLL_11620 HKOGLL_11620 92.6 Morganella morganii S5 lytS Sensor histidine kinase, LytS/YehU family
PMI_RS17100 PMI_RS17100 75.4 Proteus mirabilis HI4320 - sensor histidine kinase

Distribution of the homologs in the orthogroup group_1411

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1411

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD16 0.0 798 70 0 561 3 btsS Sensor histidine kinase BtsS Shigella flexneri
P0AD14 0.0 798 70 0 561 1 btsS Sensor histidine kinase BtsS Escherichia coli (strain K12)
P0AD15 0.0 798 70 0 561 3 btsS Sensor histidine kinase BtsS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P94513 5.2e-102 323 34 10 586 3 lytS Sensor protein LytS Bacillus subtilis (strain 168)
Q4L8V3 2.05e-86 282 32 9 582 3 lytS Sensor protein LytS Staphylococcus haemolyticus (strain JCSC1435)
Q82Z75 1.5e-80 267 30 7 526 3 lytS Sensor protein LytS Enterococcus faecalis (strain ATCC 700802 / V583)
Q4A009 2.6e-80 266 31 9 583 3 lytS Sensor protein LytS Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q81JL2 7.34e-79 262 34 9 496 3 lytS Sensor protein LytS Bacillus anthracis
Q5HLG3 9.79e-79 262 33 7 524 3 lytS Sensor protein LytS Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q814J0 9.95e-79 262 34 9 496 3 lytS Sensor protein LytS Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q8CR79 1.16e-78 262 33 7 524 3 lytS Sensor protein LytS Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q6GK52 1.64e-77 259 30 10 585 3 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain MRSA252)
Q2YV68 2.86e-77 258 30 12 587 3 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain bovine RF122 / ET3-1)
P60614 3.15e-77 258 30 10 585 3 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain MW2)
Q6GCL2 3.15e-77 258 30 10 585 3 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain MSSA476)
P60613 3.15e-77 258 30 10 585 3 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain N315)
P60612 3.15e-77 258 30 10 585 1 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJB6 3.15e-77 258 30 10 585 3 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain COL)
Q53705 3.15e-77 258 30 10 585 1 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK10 3.15e-77 258 30 10 585 3 lytS Sensor histidine kinase/phosphatase LytS Staphylococcus aureus (strain USA300)
Q8E218 3.97e-75 252 31 13 543 3 lytS Sensor protein LytS Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)
Q8E7H4 3.97e-75 252 31 13 543 3 lytS Sensor protein LytS Streptococcus agalactiae serotype III (strain NEM316)
Q8DVB6 7.03e-67 230 33 10 467 3 lytS Sensor protein LytS Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P0AA93 4.7e-61 214 28 13 549 1 ypdA Sensor histidine kinase YpdA Escherichia coli (strain K12)
P0AA94 4.7e-61 214 28 13 549 3 ypdA Sensor histidine kinase YpdA Escherichia coli O157:H7
Q8EQQ2 5.92e-61 214 28 8 506 3 lytS Sensor protein LytS Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)
O31516 1.74e-23 108 27 3 229 3 yesM Sensor histidine kinase YesM Bacillus subtilis (strain 168)
P94586 9.18e-18 87 27 5 204 5 ywpD Putative uncharacterized protein YwpD Bacillus subtilis (strain 168)
Q5HKE1 7.33e-17 87 29 4 206 3 SERP2405 Uncharacterized sensor-like histidine kinase SERP2405 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CU03 5.31e-16 84 26 4 253 3 SE_0166 Uncharacterized sensor-like histidine kinase SE_0166 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q2YV55 1.21e-15 83 26 6 253 3 hptS Sensor protein kinase HptS Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q8NYJ8 2.83e-15 82 26 6 253 3 hptS Sensor protein kinase HptS Staphylococcus aureus (strain MW2)
Q6GCQ2 2.83e-15 82 26 6 253 3 hptS Sensor protein kinase HptS Staphylococcus aureus (strain MSSA476)
Q7A7X8 2.94e-15 82 26 6 253 3 hptS Sensor protein kinase HptS Staphylococcus aureus (strain N315)
Q99WZ9 2.94e-15 82 26 6 253 3 hptS Sensor protein kinase HptS Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJF6 2.96e-15 82 26 6 253 2 hptS Sensor protein kinase HptS Staphylococcus aureus (strain COL)
Q2G1E0 2.96e-15 82 26 6 253 1 hptS Sensor protein kinase HptS Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK46 2.96e-15 82 26 6 253 3 hptS Sensor protein kinase HptS Staphylococcus aureus (strain USA300)
Q6GK92 3.35e-15 82 26 6 253 3 hptS Sensor protein kinase HptS Staphylococcus aureus (strain MRSA252)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09940
Feature type CDS
Gene -
Product sensor histidine kinase
Location 93893 - 95602 (strand: -1)
Length 1710 (nucleotides) / 569 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1411
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06580 Histidine kinase
PF07694 5TMR of 5TMR-LYT

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3275 Signal transduction mechanisms (T) T Sensor histidine kinase, LytS/YehU family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02478 two-component system, LytTR family, sensor kinase [EC:2.7.13.3] - -

Protein Sequence

MYDPNLIFLLLQQMCVYLVIAWVLSKTPLVLPVLQVTVRLPHKLMCYLIFSVFCVMGTYFGLNINDSIANTRAIGSVLGGLLGGPSVGLLVGFTGGLHRYSLGGMTAFSCMISTIVEGLIGGLVHRYYMKRGQINKLFNPWTAAGVTFIAELAQMAIILLLARPFNEALNLVKDIAAPMIIANTIGAAMFIRILLDRRAIFEKYTSAFSARALKLAISTDGILRQGFNETNSRQVAQVLYDELNVAAVAITDREKLLAFIGVGDDHHLPGTPIASPYSRQAIINNEVVYADGNEMPYCCSINPHCKLGSTLVIPLTGENNQVVGTIKLYEVKNRLFGSINRTLGEGIASLLSAQILAGQFERSKQSLLETEVKLLHAQVNPHFLFNALNTLQAVIRRDAEQAGSLVQNLSTFFRKNLKRPGEIATLAAEIEHVNAYLQIEKARFREQLCVEIAIPDTLKHTRLPVFSLQPIVENAIKHGTSQIFEQGKITLTAHTEGPLLVVSITDNAGLYCPDGISDGLGMSLVDKRIKVRYGKQYGLSVHCVPEVQTTITLTLPLDSSAGTTVPPDN

Flanking regions ( +/- flanking 50bp)

TCTCAGTTAGTTACAAATAATCTTTCCCGGACGAGTAATCTGACAGCGAAATGTATGATCCTAATCTGATTTTCCTGCTACTCCAGCAGATGTGTGTGTATCTGGTCATCGCCTGGGTACTCAGTAAAACGCCCCTGGTGCTGCCGGTGTTGCAAGTCACCGTCCGCCTGCCGCATAAACTGATGTGCTACCTGATTTTTTCCGTTTTCTGTGTCATGGGCACCTATTTCGGACTGAATATCAATGACTCAATCGCCAATACCCGGGCCATCGGCTCCGTACTCGGCGGGCTGCTTGGTGGTCCGTCAGTCGGGCTGTTAGTGGGTTTTACCGGCGGACTGCACCGTTATTCCCTCGGCGGAATGACCGCGTTCAGCTGTATGATTTCCACCATCGTGGAGGGGCTGATTGGCGGGCTGGTTCACCGCTACTATATGAAGCGCGGGCAAATCAATAAATTATTTAATCCCTGGACGGCAGCGGGTGTCACTTTTATCGCCGAGCTGGCGCAGATGGCGATTATTCTGTTACTCGCCCGCCCGTTTAATGAAGCATTGAACCTGGTAAAAGATATTGCCGCGCCGATGATTATCGCCAATACCATTGGTGCCGCCATGTTTATCCGTATTCTTCTGGACAGACGCGCCATTTTTGAAAAATACACCAGTGCGTTTTCCGCCCGGGCGCTGAAACTGGCGATCAGTACTGACGGCATACTACGCCAGGGGTTTAATGAAACCAACAGCCGCCAGGTGGCACAGGTTCTGTATGATGAACTGAATGTTGCCGCCGTGGCGATCACTGACAGAGAAAAACTGCTGGCATTCATTGGTGTCGGTGATGATCACCATCTGCCGGGTACGCCTATTGCTTCCCCCTACTCCCGCCAGGCTATTATCAACAATGAAGTGGTTTATGCGGACGGTAATGAAATGCCTTATTGCTGCTCGATTAACCCGCACTGCAAACTCGGCTCCACCCTGGTTATCCCGCTTACCGGAGAGAACAATCAGGTGGTGGGTACCATCAAGCTGTATGAAGTCAAAAACCGTCTGTTCGGCTCCATAAACCGGACGCTGGGTGAAGGGATAGCCAGCCTGTTATCAGCACAAATTCTCGCCGGGCAGTTTGAACGGAGTAAGCAATCACTACTGGAGACAGAGGTAAAACTGCTGCATGCACAGGTGAATCCACATTTCCTGTTTAATGCCCTGAATACGCTTCAGGCAGTGATCCGCAGAGATGCAGAACAGGCCGGAAGCCTGGTTCAGAATCTCTCGACATTCTTCCGTAAAAATTTAAAGCGTCCGGGTGAAATTGCGACACTGGCAGCCGAAATTGAGCATGTGAATGCTTACTTACAAATAGAGAAAGCCCGTTTTCGCGAGCAACTGTGCGTGGAGATAGCCATCCCCGATACATTAAAACATACCAGACTGCCGGTCTTTTCTTTGCAGCCTATCGTCGAAAATGCAATAAAACACGGTACATCACAGATATTTGAGCAGGGAAAAATTACCCTGACAGCGCATACAGAAGGTCCTCTTCTTGTCGTCAGTATCACTGACAACGCCGGGCTGTACTGTCCGGACGGAATAAGCGACGGACTGGGGATGAGCCTGGTCGATAAACGCATCAAAGTCCGCTATGGTAAGCAGTACGGTCTTAGTGTTCACTGTGTGCCCGAAGTACAAACAACGATTACGCTGACCTTACCTCTCGATTCATCGGCAGGTACCACTGTGCCGCCTGATAACTAAAAAAATGATAATGACACAATGAATGTTTTAATTGTTGATGATGAACCGCT