COG3275


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3275, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Sensor histidine kinase, LytS/YehU family
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG3275 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1411 FBDBKF_08720 125259 126968 -1 lytS Sensor histidine kinase, LytS/YehU family Morganella morganii S1
1 group_1411 EHELCC_12805 36757 38466 1 lytS Sensor histidine kinase, LytS/YehU family Morganella morganii S2
2 group_1411 NLDBIP_13145 36757 38466 1 lytS Sensor histidine kinase, LytS/YehU family Morganella morganii S4
3 group_1411 LHKJJB_13410 123977 125686 -1 lytS Sensor histidine kinase, LytS/YehU family Morganella morganii S3
4 group_1411 HKOGLL_11620 36757 38466 1 lytS Sensor histidine kinase, LytS/YehU family Morganella morganii S5
5 group_1411 F4V73_RS09940 93893 95602 -1 sensor histidine kinase Morganella psychrotolerans
6 group_1411 PMI_RS17100 3760581 3762284 -1 sensor histidine kinase Proteus mirabilis HI4320