Homologs in group_1403

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08665 FBDBKF_08665 94.0 Morganella morganii S1 nusA Transcription antitermination factor NusA, contains S1 and KH domains
EHELCC_12860 EHELCC_12860 94.0 Morganella morganii S2 nusA Transcription antitermination factor NusA, contains S1 and KH domains
NLDBIP_13200 NLDBIP_13200 94.0 Morganella morganii S4 nusA Transcription antitermination factor NusA, contains S1 and KH domains
LHKJJB_13355 LHKJJB_13355 94.0 Morganella morganii S3 nusA Transcription antitermination factor NusA, contains S1 and KH domains
HKOGLL_11675 HKOGLL_11675 94.0 Morganella morganii S5 nusA Transcription antitermination factor NusA, contains S1 and KH domains
PMI_RS17020 PMI_RS17020 89.0 Proteus mirabilis HI4320 nusA transcription termination factor NusA

Distribution of the homologs in the orthogroup group_1403

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1403

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFF9 0.0 857 83 1 502 3 nusA Transcription termination/antitermination protein NusA Shigella flexneri
P0AFF6 0.0 857 83 1 502 1 nusA Transcription termination/antitermination protein NusA Escherichia coli (strain K12)
P0AFF7 0.0 857 83 1 502 3 nusA Transcription termination/antitermination protein NusA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFF8 0.0 857 83 1 502 3 nusA Transcription termination/antitermination protein NusA Escherichia coli O157:H7
P37430 0.0 825 81 2 507 3 nusA Transcription termination/antitermination protein NusA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8K9H0 0.0 725 71 1 499 3 nusA Transcription termination/antitermination protein NusA Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57459 0.0 715 69 3 506 3 nusA Transcription termination/antitermination protein NusA Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P43915 0.0 701 68 2 502 3 nusA Transcription termination/antitermination protein NusA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AF4 0.0 688 68 1 503 3 nusA Transcription termination/antitermination protein NusA Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q83BS0 0.0 541 55 6 509 1 nusA Transcription termination/antitermination protein NusA Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q92HF4 1.77e-110 340 38 6 500 3 nusA Transcription termination/antitermination protein NusA Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9ZCZ7 1.05e-109 338 37 6 501 3 nusA Transcription termination/antitermination protein NusA Rickettsia prowazekii (strain Madrid E)
P32727 2.08e-78 253 41 1 331 1 nusA Transcription termination/antitermination protein NusA Bacillus subtilis (strain 168)
Q9KA74 1.31e-77 251 37 2 350 3 nusA Transcription termination/antitermination protein NusA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P48514 2.25e-72 238 38 6 343 3 nusA Transcription termination/antitermination protein NusA Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q9Z5J1 1.25e-51 182 32 7 365 3 nusA Transcription termination/antitermination protein NusA Mycobacterium leprae (strain TN)
P9WIV3 3.8e-49 175 35 6 334 1 nusA Transcription termination/antitermination protein NusA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIV2 3.8e-49 175 35 6 334 3 nusA Transcription termination/antitermination protein NusA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A5M3 3.8e-49 175 35 6 334 3 nusA Transcription termination/antitermination protein NusA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O51740 1.68e-43 163 30 6 358 3 nusA Transcription termination/antitermination protein NusA Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P47387 1.18e-31 131 28 8 344 3 nusA Transcription termination/antitermination protein NusA Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q9ZJA6 2.51e-31 128 24 7 375 3 nusA Transcription termination/antitermination protein NusA Helicobacter pylori (strain J99 / ATCC 700824)
P55977 3.21e-31 127 24 7 375 3 nusA Transcription termination/antitermination protein NusA Helicobacter pylori (strain ATCC 700392 / 26695)
P75591 1.23e-26 116 25 9 346 1 nusA Transcription termination/antitermination protein NusA Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P0CW99 6.7e-08 55 36 3 100 3 nusA Probable transcription termination protein NusA Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R8D2 6.7e-08 55 36 3 100 3 nusA Probable transcription termination protein NusA Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
P11523 2.01e-06 50 34 3 99 3 nusA Probable transcription termination protein NusA Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P15738 0.000318 44 33 2 93 3 nusA Probable transcription termination protein NusA Halococcus morrhuae

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09890
Feature type CDS
Gene nusA
Product transcription termination factor NusA
Location 80059 - 81570 (strand: 1)
Length 1512 (nucleotides) / 503 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1403
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF08529 NusA N-terminal domain
PF13184 NusA-like KH domain
PF14520 Helix-hairpin-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0195 Transcription (K) K Transcription antitermination factor NusA, contains S1 and KH domains

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02600 transcription termination/antitermination protein NusA - -

Protein Sequence

MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVCIDRKTGDFDTFRRWVAVDEVTQPTREITLEAAEYDTPGILLGEYIEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRQHQGEIITGVVKKVNRENITLDLGSNAEAVIIREDMLPRENFRPGDRIRGVLYDVRPEARGAQLFVTRSRPEMLVELFKIEVPEIGEEIIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDNCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRDNDKWELNVMTADELNAKHQAEAHASIETFVKHLDIDEDFATILVEEGFSTLEELVYVPVSELLEIDGLDEETVDALRERAKAVLTTLELAQKESQSGAIPADDLLNLEGMDRTLAFSLASRGICTLEDLAEQGIDDLTDIEELSDEKAGVLIMAARNICWFGDDAS

Flanking regions ( +/- flanking 50bp)

GCTAACCTGGTACCCCACTTTTAATATAAAGTTCAAAAGAGGCAACTAGGATGAATAAAGAAATTCTGGCTGTTGTTGAGGCAGTTTCTAACGAAAAATCGCTTCCTCGTGAGAAAATTTTTGAAGCCCTGGAAACTGCACTGGCAACCGCCACTAAGAAAAAATACGAGCAGGAAATTGAAGTTCGTGTTTGTATTGACCGTAAAACCGGTGATTTCGACACTTTTCGTCGCTGGGTAGCGGTTGATGAAGTCACTCAGCCAACCCGTGAAATTACACTGGAAGCGGCTGAATATGATACGCCGGGCATCCTGCTGGGTGAATATATCGAAGATCAGATTGAATCTGTTACCTTTGACCGTATCACCACTCAGACGGCCAAGCAGGTTATCGTTCAGAAAGTCCGCGAAGCAGAGCGCGCAATGGTCGTTGACCAATTCCGCCAGCATCAGGGCGAAATCATCACGGGTGTGGTGAAGAAAGTGAACCGTGAAAACATTACGCTGGATTTAGGCAGTAATGCAGAAGCGGTTATCATACGTGAAGACATGTTACCGCGTGAAAACTTCCGCCCGGGTGACCGCATCCGTGGTGTCCTGTATGATGTTCGTCCGGAAGCCCGTGGTGCACAATTATTTGTGACCCGCTCCCGTCCGGAAATGTTGGTCGAATTATTTAAAATCGAAGTACCGGAAATCGGTGAAGAGATTATTGAAATTAAAGCGGCTGCCCGCGACCCCGGTTCCCGTGCTAAAATAGCGGTGAAAACCAACGACAAACGTATTGACCCGGTAGGGGCGTGTGTCGGAATGCGTGGTGCCCGTGTACAAGCCGTTTCCAGTGAACTGGGCGGGGAGCGGATTGATATCGTATTGTGGGATGATAATCCGGCACAATTCGTGATTAATGCAATGGCTCCGGCAGATGTTGCATCTATTGTGGTTGATGAAGATAACTGCACAATGGACGTTGCTGTGGAAAGCAGTAACCTTGCACAAGCCATTGGCCGTAACGGCCAGAATGTGCGTCTCGCTGCACAACTGCTGAAGAAACATCGCGATAATGACAAGTGGGAACTCAATGTCATGACCGCCGATGAACTTAACGCGAAACATCAGGCGGAAGCACACGCCTCCATTGAAACTTTTGTTAAGCATCTCGACATCGATGAAGATTTCGCCACCATATTAGTGGAAGAAGGTTTTTCCACACTGGAAGAACTGGTCTATGTGCCGGTCAGCGAACTGCTGGAAATCGACGGCCTCGATGAGGAAACAGTTGACGCCCTGCGTGAACGTGCAAAAGCCGTTTTAACAACGCTCGAACTGGCACAGAAAGAGAGCCAGTCAGGTGCAATACCGGCGGATGATTTGTTAAATCTTGAAGGCATGGACCGCACACTGGCATTTAGTTTGGCTTCTCGTGGTATTTGTACTCTTGAAGACCTTGCCGAACAGGGTATCGACGACCTGACTGATATTGAAGAACTGAGTGATGAGAAAGCAGGTGTTCTCATTATGGCAGCACGTAATATCTGTTGGTTTGGCGACGATGCATCTTAATTTGTAGCGGGAAGGAGCAGCATGACAGAATCAGTAAAAACACTGGCAGA