Homologs in group_3718

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00040 F4V73_RS00040 22.0 Morganella psychrotolerans tssJ type VI secretion system lipoprotein TssJ
F4V73_RS16735 F4V73_RS16735 25.9 Morganella psychrotolerans tssJ type VI secretion system lipoprotein TssJ

Distribution of the homologs in the orthogroup group_3718

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3718

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09350
Feature type CDS
Gene tssJ
Product type VI secretion system lipoprotein TssJ
Location 1968093 - 1968653 (strand: -1)
Length 561 (nucleotides) / 186 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3718
Orthogroup size 3
N. genomes 1

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Genomic region

Domains

PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3521 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11906 type VI secretion system protein VasD Bacterial secretion system -

Protein Sequence

MSINTVMKHTDFKVVNILCVLVISLLLTGCSILNFARSTPSEAKSASELKITLVASAEINKSKNRLPSPLNIFVYAVKSKQSFLSTDYLTYLYKNKPNPENEMLILEYIIRPGETKTIDYKINSDYPYIGIIAAYKDISNAKWSTVYSLDNLRGATWTEKYILFTEPEHEIKVLFSNSVVSIKENG

Flanking regions ( +/- flanking 50bp)

CTTAGTTATTTATACATATAAGCATTTTCAATAATGCCAGGCATGGTTATATGTCGATTAATACAGTCATGAAACATACCGATTTTAAAGTAGTAAATATTTTGTGTGTCCTTGTGATATCGTTGTTATTAACAGGGTGCAGTATTTTAAATTTTGCCAGATCAACTCCGTCTGAAGCTAAATCAGCGTCAGAACTCAAGATTACTTTAGTGGCCAGTGCTGAAATTAATAAAAGTAAAAACCGGTTACCATCGCCACTGAATATATTTGTTTATGCTGTTAAATCTAAACAATCATTTTTAAGTACGGACTATTTGACGTATTTATATAAAAACAAGCCTAACCCTGAAAATGAAATGCTTATTTTGGAATATATCATCAGGCCGGGTGAAACAAAAACGATAGATTACAAGATTAATTCAGATTATCCCTATATCGGAATAATTGCTGCTTATAAAGATATCAGTAATGCCAAATGGAGCACTGTTTATTCGCTGGATAATCTGCGCGGTGCAACATGGACTGAAAAATACATTTTATTTACCGAGCCTGAACATGAAATTAAAGTCTTATTTTCAAATTCAGTTGTGTCAATCAAAGAGAATGGATGAGTTGTGAGAACAAATAAAGTCGTATGGAGTGAGGGACTGTTCCTGCGCCC