Orthogroup:group_3718


Homologs in group_3718

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS00040 F4V73_RS00040 Morganella psychrotolerans tssJ type VI secretion system lipoprotein TssJ
F4V73_RS09350 F4V73_RS09350 Morganella psychrotolerans tssJ type VI secretion system lipoprotein TssJ
F4V73_RS16735 F4V73_RS16735 Morganella psychrotolerans tssJ type VI secretion system lipoprotein TssJ

Distribution of group_3718 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3718 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3718

Orthogroup content: 3 members

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This page summarizes the annotation of all members of the orthologous group group_3718.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssJ 3

Product

# Product Occurence
1 type VI secretion system lipoprotein TssJ 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3521 3 U Intracellular trafficking, secretion, and vesicular transport (U) Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11906 3 type VI secretion system protein VasD Bacterial secretion system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12790 3 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113

Protein length

Min length 169
Max length 186
Mean length (sd) 179.7 (9.3)
Median length 184.0

Protein length distribution