Homologs in group_902

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04760 FBDBKF_04760 96.1 Morganella morganii S1 agaW PTS N-acetylgalactosamine transporter subunit IIC
EHELCC_06050 EHELCC_06050 96.1 Morganella morganii S2 agaW PTS N-acetylgalactosamine transporter subunit IIC
NLDBIP_06370 NLDBIP_06370 96.1 Morganella morganii S4 agaW PTS N-acetylgalactosamine transporter subunit IIC
LHKJJB_03250 LHKJJB_03250 96.1 Morganella morganii S3 agaW PTS N-acetylgalactosamine transporter subunit IIC
HKOGLL_06725 HKOGLL_06725 96.1 Morganella morganii S5 agaW PTS N-acetylgalactosamine transporter subunit IIC
PMI_RS10530 PMI_RS10530 41.7 Proteus mirabilis HI4320 agaW PTS N-acetylgalactosamine transporter subunit IIC

Distribution of the homologs in the orthogroup group_902

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_902

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42905 1.19e-75 228 90 1 130 5 agaW Putative N-acetylgalactosamine permease IIC component 2 Escherichia coli (strain K12)
P42910 2.61e-53 176 36 3 265 1 agaC N-acetylgalactosamine permease IIC component 1 Escherichia coli (strain K12)
P37082 3.62e-29 114 30 1 243 2 sorA PTS system sorbose-specific EIIC component Klebsiella pneumoniae
Q9RGG3 4.32e-25 103 28 1 243 2 sorC PTS system sorbose-specific EIIC component Lacticaseibacillus casei
P69804 3.72e-20 90 28 2 254 3 manY PTS system mannose-specific EIIC component Shigella flexneri
P69801 3.72e-20 90 28 2 254 1 manY PTS system mannose-specific EIIC component Escherichia coli (strain K12)
P69802 3.72e-20 90 28 2 254 3 manY PTS system mannose-specific EIIC component Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69803 3.72e-20 90 28 2 254 3 manY PTS system mannose-specific EIIC component Escherichia coli O157:H7
P26381 7.09e-11 64 29 0 191 4 levF Fructose permease IIC component Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09230
Feature type CDS
Gene agaW
Product PTS N-acetylgalactosamine transporter subunit IIC
Location 1933639 - 1934418 (strand: 1)
Length 780 (nucleotides) / 259 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_902
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03609 PTS system sorbose-specific iic component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3715 Carbohydrate transport and metabolism (G) G Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02746 N-acetylgalactosamine PTS system EIIC component Galactose metabolism
Metabolic pathways
Phosphotransferase system (PTS)		 -

Protein Sequence

MEISLLQAVALGLVAFIAGLDLFNGLTHIHRPVVLGPIVGLILGDLNTGILTGGTLELVWMGLAPLAGAQPPNVIIGTIVGTAFAISTGVKPEVAVGVAVPFAVAVQMGITFLFSVMSGVMSRCDKMAANADTRGIERINYLALLALGLFYFLCAFLPIWFGADHAKNLIDVLPTRLIDGLGVAGGIMPAIGFAVLLKIMMKNAYIPYFILGFVGAAWLQLPVLAIAAAALAMAMIDFVRKPATTEPAHPSQEEFEDGI

Flanking regions ( +/- flanking 50bp)

ACCGACAGAACCGGCGCAGGATCTGTTTAAACTGCTCTGAGGATACATGTATGGAAATCAGTCTGTTACAAGCTGTCGCCCTCGGGCTGGTGGCTTTCATTGCCGGATTGGATCTGTTTAACGGGCTCACACATATTCACCGCCCGGTTGTACTGGGGCCGATTGTCGGGCTGATACTCGGTGATCTCAATACCGGGATCCTGACCGGCGGTACCCTGGAACTGGTCTGGATGGGACTCGCTCCACTCGCGGGCGCTCAGCCGCCTAACGTAATAATCGGCACTATCGTGGGGACGGCTTTCGCTATTTCCACCGGCGTGAAGCCGGAAGTCGCCGTCGGCGTTGCCGTACCATTTGCCGTGGCGGTTCAGATGGGGATCACGTTCCTGTTCTCTGTGATGTCCGGCGTCATGTCCCGCTGTGACAAAATGGCAGCCAATGCCGACACGCGGGGTATAGAGCGTATCAACTATCTGGCACTGCTTGCCCTTGGTCTGTTCTATTTTCTCTGCGCGTTTTTACCTATCTGGTTCGGGGCTGATCACGCTAAAAACCTGATTGATGTTCTGCCGACCCGGTTAATAGACGGGCTGGGTGTCGCGGGCGGTATCATGCCGGCTATCGGTTTTGCCGTTCTGCTGAAAATCATGATGAAAAATGCCTACATTCCTTACTTTATCCTGGGATTTGTCGGTGCCGCCTGGCTTCAGTTGCCGGTACTGGCAATCGCTGCCGCCGCACTGGCAATGGCTATGATCGATTTTGTCCGCAAACCGGCGACAACCGAACCGGCACATCCGTCACAAGAGGAATTTGAAGATGGCATCTGAAAAAACGCATTCATCTGCGCCCGCTCAGGAAGAAACCTTGCTGCCCGCAG