Homologs in group_890

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04620 FBDBKF_04620 87.4 Morganella morganii S1 cybB Cytochrome b561
EHELCC_05910 EHELCC_05910 87.4 Morganella morganii S2 cybB Cytochrome b561
NLDBIP_06230 NLDBIP_06230 87.4 Morganella morganii S4 cybB Cytochrome b561
LHKJJB_03110 LHKJJB_03110 87.4 Morganella morganii S3 cybB Cytochrome b561
HKOGLL_06585 HKOGLL_06585 87.4 Morganella morganii S5 cybB Cytochrome b561
PMI_RS10445 PMI_RS10445 73.2 Proteus mirabilis HI4320 - cytochrome b

Distribution of the homologs in the orthogroup group_890

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_890

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75925 2.57e-77 232 62 0 180 1 yceJ Cytochrome b561 homolog 2 Escherichia coli (strain K12)
P76345 0.000287 43 26 5 185 1 yodB Cytochrome b561 homolog 1 Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09070
Feature type CDS
Gene -
Product cytochrome b
Location 1896917 - 1897468 (strand: -1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_890
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01292 Prokaryotic cytochrome b561

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3038 Energy production and conversion (C) C Cytochrome b561

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12262 superoxide oxidase [EC:1.10.3.17] - -

Protein Sequence

MQWKNNAERYGHLSVLLHWGVALTVYGMFALGLWMVSLGYYDIWYHSAPEIHKSIGILLFIVLVIRMVWRWISPPPPALTTYTRLTRISATLAHWLLYGILFAILITGYFISTANGQAISVFGWFEIPASLADGASQADSAGTIHLYLAWSVVVLSALHALAAFKHHLFDKDATLKRMLGMKP

Flanking regions ( +/- flanking 50bp)

AGGCTGTTACCGGGTTGTTACTGATATGGGTTATTAAAGGGTATTTATCAATGCAATGGAAAAATAATGCTGAGCGATACGGACACCTCTCCGTTTTGCTTCACTGGGGTGTGGCACTCACTGTTTACGGGATGTTTGCCCTGGGGCTGTGGATGGTATCGCTGGGATATTATGATATTTGGTATCACAGTGCGCCGGAGATCCATAAAAGTATCGGCATTCTGTTGTTTATTGTTTTGGTTATCCGGATGGTCTGGCGCTGGATTTCCCCGCCGCCGCCTGCGTTAACCACCTATACCCGGCTTACCCGGATCAGTGCAACACTGGCGCACTGGCTGTTGTACGGTATTTTATTTGCCATCCTGATAACCGGATATTTTATTTCAACGGCAAATGGTCAGGCCATTTCTGTTTTCGGGTGGTTTGAGATACCAGCCTCACTGGCTGACGGTGCATCACAGGCGGACAGCGCAGGAACTATTCATCTGTATCTTGCCTGGTCTGTTGTTGTGCTGTCCGCGCTGCACGCGCTGGCCGCATTCAAACATCATCTCTTTGATAAAGACGCCACATTAAAACGTATGCTGGGCATGAAACCCTGAACGCAGGGAAGCCCGTAATTTTATTATGACGGAGAAGTAATAATGCTGAA