Homologs in group_883

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04540 FBDBKF_04540 86.7 Morganella morganii S1 arsR DNA-binding transcriptional regulator, ArsR family
EHELCC_05830 EHELCC_05830 86.7 Morganella morganii S2 arsR DNA-binding transcriptional regulator, ArsR family
NLDBIP_06150 NLDBIP_06150 86.7 Morganella morganii S4 arsR DNA-binding transcriptional regulator, ArsR family
LHKJJB_03030 LHKJJB_03030 86.7 Morganella morganii S3 arsR DNA-binding transcriptional regulator, ArsR family
HKOGLL_06505 HKOGLL_06505 86.7 Morganella morganii S5 arsR DNA-binding transcriptional regulator, ArsR family
PMI_RS10365 PMI_RS10365 72.8 Proteus mirabilis HI4320 - metalloregulator ArsR/SmtB family transcription factor

Distribution of the homologs in the orthogroup group_883

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_883

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8UAA8 6.73e-29 103 52 0 98 1 bigR Biofilm growth-associated repressor Agrobacterium fabrum (strain C58 / ATCC 33970)
Q87AD5 4.27e-28 101 50 0 97 3 bigR Biofilm growth-associated repressor Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q9PFB1 4.77e-28 101 50 0 97 1 bigR Biofilm growth-associated repressor Xylella fastidiosa (strain 9a5c)
P77295 2.91e-20 81 42 1 98 1 ygaV Probable HTH-type transcriptional regulator YgaV Escherichia coli (strain K12)
P52695 6.35e-18 75 38 0 94 1 hlyU Transcriptional activator HlyU Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P28267 9.95e-17 72 43 0 89 4 nolR Nodulation protein NolR Rhizobium meliloti
O69711 1.14e-13 65 45 0 82 1 nmtR HTH-type transcriptional regulator NmtR Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
O31844 7.95e-13 62 43 1 86 1 czrA HTH-type transcriptional repressor CzrA Bacillus subtilis (strain 168)
P30346 9.27e-12 60 45 1 77 4 merR Probable mercury resistance operon repressor Streptomyces lividans
Q55940 4.67e-11 58 38 0 78 1 ziaR Transcriptional repressor SmtB homolog Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P9WMI7 8.96e-09 52 40 1 76 1 Rv0081 Uncharacterized HTH-type transcriptional regulator Rv0081 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMI6 8.96e-09 52 40 1 76 2 MT0088 Uncharacterized HTH-type transcriptional regulator MT0088 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O53838 3.02e-08 51 37 0 72 1 kmtR HTH-type transcriptional regulator KmtR Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q58721 3.46e-08 50 31 1 72 4 MJ1325 Uncharacterized HTH-type transcriptional regulator MJ1325 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O08446 1.87e-07 50 40 0 76 1 Rv0324 HTH-type transcriptional regulator Rv0324 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMI9 3.67e-07 48 32 1 90 1 cmtR HTH-type transcriptional regulator CmtR Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMI8 3.67e-07 48 32 1 90 3 cmtR HTH-type transcriptional regulator CmtR Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P67732 3.67e-07 48 32 1 90 3 cmtR HTH-type transcriptional regulator CmtR Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P30340 5.31e-07 47 37 0 80 1 smtB Transcriptional repressor SmtB Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q01256 8.38e-07 47 37 0 70 4 arsR Arsenical resistance operon repressor Staphylococcus xylosus
P9WMI5 9.29e-07 47 33 0 69 1 smtB HTH-type transcriptional repressor SmtB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMI4 9.29e-07 47 33 0 69 3 smtB HTH-type transcriptional repressor SmtB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P30338 1.67e-06 46 38 0 65 4 arsR Arsenical resistance operon repressor Staphylococcus aureus
O32242 3.59e-06 45 29 0 64 2 sdpR Transcriptional repressor SdpR Bacillus subtilis (strain 168)
P96677 3.98e-06 45 35 0 70 1 aseR HTH-type transcriptional repressor AseR Bacillus subtilis (strain 168)
O52026 4.27e-06 45 40 3 82 2 arsR2 Putative arsenical resistance operon repressor ArsR2 Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
O31480 2.19e-05 43 35 0 67 4 yczG Uncharacterized HTH-type transcriptional regulator YczG Bacillus subtilis (strain 168)
P37374 3.55e-05 43 35 1 73 4 cadC Cadmium resistance transcriptional regulatory protein CadC homolog Staphylococcus aureus
Q56405 6.18e-05 42 32 4 86 3 cadC Cadmium resistance transcriptional regulatory protein CadC Listeria monocytogenes
P30339 0.000106 42 29 2 78 3 cadC Cadmium resistance transcriptional regulatory protein CadC Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4)
O31178 0.000192 40 36 2 72 1 pagR Transcriptional repressor PagR Bacillus anthracis
P20047 0.000575 39 28 2 78 1 cadC Cadmium resistance transcriptional regulatory protein CadC Staphylococcus aureus
P37309 0.000762 39 36 1 66 3 arsR Arsenical resistance operon repressor Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08995
Feature type CDS
Gene -
Product metalloregulator ArsR/SmtB family transcription factor
Location 1878795 - 1879124 (strand: -1)
Length 330 (nucleotides) / 109 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_883
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01022 Bacterial regulatory protein, arsR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0640 Transcription (K) K DNA-binding transcriptional regulator, ArsR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22042 ArsR family transcriptional regulator, virulence genes transcriptional regulator - -

Protein Sequence

MISTQLADMQEAAAGVAALLKTLGNPDRLLLLCQLSQGECNVSELEARAGISQPTLSQQLTVLRNEGLVSTRRDGKRIYYSVADEKVLVLLNTLYQLYCPKKEEKQDEH

Flanking regions ( +/- flanking 50bp)

CCAAAAACAATATAATATAATTATATATAATGTAATGAGGAATAATTTGGATGATATCCACACAGCTTGCCGATATGCAGGAAGCCGCTGCCGGGGTTGCGGCATTACTGAAAACCCTGGGAAATCCTGACCGTTTATTGCTGCTTTGCCAGTTGAGTCAGGGGGAGTGCAATGTCAGTGAACTGGAAGCGCGTGCGGGCATCAGTCAGCCGACACTTTCGCAGCAACTGACCGTATTGCGTAATGAAGGGTTAGTCAGCACCCGCCGTGACGGAAAACGCATTTATTATTCAGTGGCAGATGAAAAAGTGCTGGTACTACTGAATACCTTATATCAGCTTTATTGTCCGAAAAAAGAGGAGAAACAGGATGAGCATTGATATGGCGGTATTTACACCGGGAAGTGCGGCACTCGGCGGGTTGGTTATCG