Homologs in group_2651

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04465 FBDBKF_04465 80.5 Morganella morganii S1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
EHELCC_05755 EHELCC_05755 80.5 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_06075 NLDBIP_06075 80.5 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_02955 LHKJJB_02955 80.5 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
HKOGLL_06430 HKOGLL_06430 80.5 Morganella morganii S5 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Distribution of the homologs in the orthogroup group_2651

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2651

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64483 1.17e-23 94 38 2 147 1 proXp-y Multifunctional Ser/Thr-tRNA deacylase ProXp-y Escherichia coli (strain K12)
P64484 1.17e-23 94 38 2 147 3 proXp-y Multifunctional Ser/Thr-tRNA deacylase ProXp-y Escherichia coli O157:H7
P37174 1.35e-07 51 25 2 151 3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08915
Feature type CDS
Gene -
Product YbaK/EbsC family protein
Location 1850393 - 1850887 (strand: -1)
Length 495 (nucleotides) / 164 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2651
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF04073 Aminoacyl-tRNA editing domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2606 Translation, ribosomal structure and biogenesis (J) J Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19055 Ala-tRNA(Pro) deacylase [EC:3.1.1.-] - -

Protein Sequence

MTTFDKITHLLNTHQVPFDVIEHPAEGRSEAISTIRGNKLSQAAKAMVLEVTIPSQDPVYVLAIVPGDCKVNFKNVARLAGGKKSSFAPPEKAQALTGCQMGAVPPFSFSEALTLYVDKRLTGAGRVYFNAGELVRSMSLAAEDYFSVIGADRIADIAVSPDGE

Flanking regions ( +/- flanking 50bp)

CGCTGGCTTCCCTTGCCGCCTTCCTGCAACTTTAATGACGTTGGGTATATATGACAACATTTGACAAAATCACGCATTTATTAAATACACATCAGGTTCCTTTTGACGTGATTGAGCATCCGGCAGAAGGGCGCTCAGAGGCGATAAGTACCATCCGGGGAAATAAACTGAGTCAGGCCGCCAAGGCAATGGTGCTGGAAGTGACGATACCTTCTCAGGATCCGGTTTATGTGCTGGCGATTGTGCCGGGAGACTGTAAAGTCAATTTCAAAAATGTCGCGCGGCTGGCGGGGGGTAAAAAATCATCCTTTGCACCACCGGAGAAAGCGCAGGCGCTGACCGGGTGTCAGATGGGGGCGGTGCCGCCGTTCAGTTTCAGTGAGGCGCTGACACTGTATGTTGATAAACGCCTGACCGGCGCAGGACGGGTGTATTTCAATGCCGGGGAACTGGTACGCTCAATGTCTCTGGCAGCAGAGGATTATTTCAGTGTGATAGGAGCTGATCGCATTGCGGATATTGCGGTTTCACCCGATGGTGAATAAATAATATATACCCAACGTCATTCAAGATACAGGAAGGCGGCAAGGGAAGA